MANIFEST.in
README.md
pyproject.toml
requirements.txt
scilink/__init__.py
scilink/auth.py
scilink/executors.py
scilink.egg-info/PKG-INFO
scilink.egg-info/SOURCES.txt
scilink.egg-info/dependency_links.txt
scilink.egg-info/entry_points.txt
scilink.egg-info/requires.txt
scilink.egg-info/top_level.txt
scilink/agents/__init__.py
scilink/agents/exp_agents/__init__.py
scilink/agents/exp_agents/_deprecation.py
scilink/agents/exp_agents/analysis_orchestrator.py
scilink/agents/exp_agents/analysis_orchestrator_tools.py
scilink/agents/exp_agents/atomistic_microscopy_agent.py
scilink/agents/exp_agents/base_agent.py
scilink/agents/exp_agents/curve_fitting_agent.py
scilink/agents/exp_agents/fft_microscopy_agent.py
scilink/agents/exp_agents/human_feedback.py
scilink/agents/exp_agents/hyperspectral_analysis_agent.py
scilink/agents/exp_agents/instruct.py
scilink/agents/exp_agents/metadata_converter.py
scilink/agents/exp_agents/orchestrator_agent.py
scilink/agents/exp_agents/preprocess.py
scilink/agents/exp_agents/recommendation_agent.py
scilink/agents/exp_agents/sam_microscopy_agent.py
scilink/agents/exp_agents/utils.py
scilink/agents/exp_agents/controllers/atomistic_microscopy_controllers.py
scilink/agents/exp_agents/controllers/base_controllers.py
scilink/agents/exp_agents/controllers/curve_fitting_controllers.py
scilink/agents/exp_agents/controllers/fft_microscopy_controllers.py
scilink/agents/exp_agents/controllers/hyperspectral_controllers.py
scilink/agents/exp_agents/controllers/sam_microscopy_controllers.py
scilink/agents/exp_agents/pipelines/atomistic_microcopy_pipelines.py
scilink/agents/exp_agents/pipelines/curve_fitting_pipelines.py
scilink/agents/exp_agents/pipelines/fft_microscopy_pipelines.py
scilink/agents/exp_agents/pipelines/hyperspectral_pipelines.py
scilink/agents/exp_agents/pipelines/sam_microscopy_pipelines.py
scilink/agents/lit_agents/__init__.py
scilink/agents/lit_agents/_deprecation.py
scilink/agents/lit_agents/instruct.py
scilink/agents/lit_agents/literature_agent.py
scilink/agents/lit_agents/novelty_scorer.py
scilink/agents/lit_agents/optimize_query.py
scilink/agents/planning_agents/__init__.py
scilink/agents/planning_agents/_deprecation.py
scilink/agents/planning_agents/base_agent.py
scilink/agents/planning_agents/bo_agent.py
scilink/agents/planning_agents/digest.txt
scilink/agents/planning_agents/excel_parser.py
scilink/agents/planning_agents/html_generator.py
scilink/agents/planning_agents/ingestor.py
scilink/agents/planning_agents/instruct.py
scilink/agents/planning_agents/knowledge_base.py
scilink/agents/planning_agents/orchestrator_tools.py
scilink/agents/planning_agents/parser_utils.py
scilink/agents/planning_agents/pdf_parser.py
scilink/agents/planning_agents/planning_agent.py
scilink/agents/planning_agents/planning_orchestrator.py
scilink/agents/planning_agents/rag_engine.py
scilink/agents/planning_agents/repo_loader.py
scilink/agents/planning_agents/scalarizer_agent.py
scilink/agents/planning_agents/user_interface.py
scilink/agents/sim_agents/__init__.py
scilink/agents/sim_agents/_deprecation.py
scilink/agents/sim_agents/atomate2_utils.py
scilink/agents/sim_agents/force_field_agent.py
scilink/agents/sim_agents/instruct.py
scilink/agents/sim_agents/lammps_agent.py
scilink/agents/sim_agents/lammps_updater.py
scilink/agents/sim_agents/lammps_utils.py
scilink/agents/sim_agents/packmol_agent.py
scilink/agents/sim_agents/structure_agent.py
scilink/agents/sim_agents/tools.py
scilink/agents/sim_agents/utils.py
scilink/agents/sim_agents/val_agent.py
scilink/agents/sim_agents/vasp_agent.py
scilink/agents/sim_agents/vasp_updater.py
scilink/agents/sim_agents/docs/aimsgb.txt
scilink/cli/__init__.py
scilink/cli/agents.py
scilink/cli/analyze.py
scilink/cli/main.py
scilink/cli/plan.py
scilink/cli/run_agent.py
scilink/cli/simulate.py
scilink/cli/workflows.py
scilink/tools/atomistic_model_manager.py
scilink/tools/atomistic_tools.py
scilink/tools/bo_tools.py
scilink/tools/curve_fitting_tools.py
scilink/tools/fft_nmf.py
scilink/tools/hyperspectral_tools.py
scilink/tools/image_processor.py
scilink/tools/sam.py
scilink/tools/spectral_unmixer.py
scilink/workflows/__init__.py
scilink/workflows/analyzers.py
scilink/workflows/dft_recommendation_workflow.py
scilink/workflows/dft_workflow.py
scilink/workflows/experiment2dft.py
scilink/workflows/experiment_novelty_workflow.py
scilink/workflows/hyperspectral_analysis_workflow.py
scilink/workflows/md_workflow.py
scilink/workflows/microscopy_analysis_workflow.py
scilink/workflows/multimodal_workflow.py
scilink/workflows/spectroscopy1d_analysis_workflow.py
scilink/wrappers/__init__.py
scilink/wrappers/litellm_wrapper.py
scilink/wrappers/llama_wrapper.py
scilink/wrappers/openai_wrapper.py
scilink/wrappers/openai_wrapper_embeddings.py
scilink/wrappers/openai_wrapper_tools.py