Metadata-Version: 2.1
Name: scikick
Version: 0.2.0
Summary: Utility for executing collecitons of computational notebooks
Home-page: UNKNOWN
License: UNKNOWN
Platform: UNKNOWN
Classifier: Programming Language :: Python :: 3.6
Classifier: Programming Language :: Python :: 3.7
Classifier: Programming Language :: Python :: 3.8
Classifier: License :: OSI Approved :: GNU Affero General Public License v3
Classifier: Operating System :: Unix
Classifier: Operating System :: POSIX :: Linux
Description-Content-Type: text/markdown
Requires-Dist: snakemake (>=5.9.0)
Requires-Dist: ruamel.yaml (>=0.16.5)
Requires-Dist: graphviz (>=0.16)



# Scikick - Notebook-Centric Analysis Workflows <img src="docs/scikick_documentation/icon.svg" align="right" width="120" />

[](https://pypi.python.org/pypi/scikick/)
[![PyPI pyversions](https://img.shields.io/pypi/pyversions/scikick.svg)](https://pypi.python.org/pypi/scikick/)
![](https://img.shields.io/badge/lifecycle-maturing-blue.svg)
[![Snakemake](https://img.shields.io/badge/snakemake-≥5.9.0-brightgreen.svg?style=flat)](https://snakemake.readthedocs.io)

## Overview

![](docs/scikick_documentation/figure1.svg)

Collections of computational notebooks often lose coherence during complex and branching investigations. Scikick is a command line utility for managing ensembles of computational notebooks developed throughout a project by providing simple commands for workflow configuration, report generation, and state management.

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## Getting Started

[Read the introduction](https://petronislab.camh.ca/pub/scikick/stable/docs/report/out_html/introduction.html) for further details and installation requirements.

See the [tutorial](https://petronislab.camh.ca/pub/scikick/stable/docs/report/out_html/hello_world.html) for a simple example usage of Scikick.

[View a data analysis report generated by Scikick.](https://petronislab.camh.ca/pub/scikick/stable/docs/single-cell_analysis/report/out_html/index.html)

Use the [issue board](https://github.com/matthewcarlucci/scikick/issues) to provide feedback on Scikick (feature requests, bugs, and further software-related comments).




