Metadata-Version: 2.1
Name: scib_metrics
Version: 0.0.2
Summary: Accelerated and Python-only scIB metrics
Project-URL: Documentation, https://scib-metrics.readthedocs.io/
Project-URL: Source, https://github.com/yoseflab/scib-metrics
Project-URL: Home-page, https://github.com/yoseflab/scib-metrics
Author: Adam Gayoso
Maintainer-email: Adam Gayoso <adamgayoso@berkeley.edu>
License: BSD 3-Clause License
        
        Copyright (c) 2022, Adam Gayoso
        All rights reserved.
        
        Redistribution and use in source and binary forms, with or without
        modification, are permitted provided that the following conditions are met:
        
        1. Redistributions of source code must retain the above copyright notice, this
           list of conditions and the following disclaimer.
        
        2. Redistributions in binary form must reproduce the above copyright notice,
           this list of conditions and the following disclaimer in the documentation
           and/or other materials provided with the distribution.
        
        3. Neither the name of the copyright holder nor the names of its
           contributors may be used to endorse or promote products derived from
           this software without specific prior written permission.
        
        THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
        AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
        IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
        DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE
        FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
        DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
        SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
        CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY,
        OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
        OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
License-File: LICENSE
Requires-Python: >=3.8
Requires-Dist: anndata
Requires-Dist: jax
Requires-Dist: jaxlib
Requires-Dist: numpy
Requires-Dist: pandas
Requires-Dist: rich
Requires-Dist: scanpy
Requires-Dist: scikit-learn
Requires-Dist: scipy
Provides-Extra: dev
Requires-Dist: bump2version; extra == 'dev'
Requires-Dist: pre-commit; extra == 'dev'
Provides-Extra: doc
Requires-Dist: furo; extra == 'doc'
Requires-Dist: ipykernel; extra == 'doc'
Requires-Dist: myst-parser; extra == 'doc'
Requires-Dist: nbsphinx; extra == 'doc'
Requires-Dist: scanpydoc[typehints]>=0.7.4; extra == 'doc'
Requires-Dist: sphinx>=4; extra == 'doc'
Requires-Dist: sphinxcontrib-bibtex>=1.0.0; extra == 'doc'
Provides-Extra: test
Requires-Dist: pytest; extra == 'test'
Requires-Dist: pytest-cov; extra == 'test'
Description-Content-Type: text/markdown

# scib-metrics

[![Tests][badge-tests]][link-tests]
[![Documentation][badge-docs]][link-docs]

[badge-tests]: https://img.shields.io/github/workflow/status/yoseflab/scib-metrics/Test/main
[link-tests]: https://github.com/yoseflab/scib-metrics/actions/workflows/test.yml
[badge-docs]: https://img.shields.io/readthedocs/scib-metrics

Accelerated and Python-only scIB metrics

## Getting started

Please refer to the [documentation][link-docs]. In particular, the

-   [API documentation][link-api].

## Installation

You need to have Python 3.8 or newer installed on your system. If you don't have
Python installed, we recommend installing [Miniconda](https://docs.conda.io/en/latest/miniconda.html).

There are several alternative options to install scib-metrics:

<!--
1) Install the latest release of `scib-metrics` from `PyPI <https://pypi.org/project/scib-metrics/>`_:

```bash
pip install scib-metrics
```
-->

1. Install the latest release on PyPI:

```bash
pip install scib-metrics
```

2. Install the latest development version:

```bash
pip install git+https://github.com/yoseflab/scib-metrics.git@main
```

## Release notes

See the [changelog][changelog].

## Contact

For questions and help requests, you can reach out in the [scverse discourse][scverse-discourse].
If you found a bug, please use the [issue tracker][issue-tracker].

## Citation

> t.b.a

[scverse-discourse]: https://discourse.scverse.org/
[issue-tracker]: https://github.com/adamgayoso/scib-metrics/issues
[changelog]: https://scib-metrics.readthedocs.io/latest/changelog.html
[link-docs]: https://scib-metrics.readthedocs.io
[link-api]: https://scib-metrics.readthedocs.io/latest/api.html
