
from .cluster import cluster_cells, cluster_cells_kmeans, aggregate_clusters_hmmcopy, aggregate_clusters, compute_umap
from .pca import pca_loadings
from .sorting import sort_cells
from .binfeat import create_bins, count_gc, mean_from_bigwig
from .genes import read_ensemble_genes_gtf, aggregate_genes
from .concat import ad_concat_cells
from .phylo import prune_leaves, align_cn_tree
