
# import functions accessed as sdq.tl.<func>: ---------------------------------
from . import utils

# -- pseudotime: --------------------------------------------------------------
from ._bin_pseudotime import bin_pseudotime

# -- kNN: ---------------------------------------------------------------------
from ._knn import kNN
from ._knn_smoothing import kNNSmoothing


# -- simulation: --------------------------------------------------------------
from ._simulation import Simulation, simulate


# -- post-simulation annotation functions: ------------------------------------
from ._annotate_gene_features import GeneCompatibility, annotate_gene_features
from ._annotate_cell_state import annotate_cell_state
from ._annotate_cell_fate import annotate_cell_fate
from ._invert_scaled_gex import invert_scaled_gex


# -- perturbation: ------------------------------------------------------------
from ._fate_perturbation_experiment import FatePerturbationExperiment
from ._fate_perturbation_screen import FatePerturbationScreen
from ._perturb import perturb
from ._perturb_scan_z_range import perturb_scan_z_range


# -- velocity plotting tools: -------------------------------------------------
from ._grid_velocity import GridVelocity
from ._velocity_embedding import VelocityEmbedding
from ._velocity_graph import velocity_graph



# -- general characterization: ------------------------------------------------
from ._drift_diffusion_state_characterization import drift, diffusion
from ._cell_potential import cell_potential, normalize_cell_potential

__all__ = [
    "bin_pseudotime",
    "kNN",
    "kNNSmoothing",
    "Simulation",
    "simulate",
    "GeneCompatibility",
    "annotate_gene_features",
    "annotate_cell_state",
    "annotate_cell_fate",
    "invert_scaled_gex",
    "FatePerturbationExperiment",
    "FatePerturbationScreen",
    "perturb",
    "perturb_scan_z_range",
    "GridVelocity",
    "VelocityEmbedding",
    "velocity_graph",
    "drift",
    "diffusion",
    "cell_potential",
    "normalize_cell_potential",
    "utils",
]

# -- --------------------------------------------------------------------------
# from ._feature_correlation import (
#     FeatureCorrelation,
#     drift_correlated_features,
#     diffusion_correlated_features,
#     potential_correlated_features,
# )

# from ._grouped_expression import GroupedExpression, grouped_expression
# from ._temporal_expression import temporal_expression


