LICENSE
README.md
setup.py
scdiffeq/__init__.py
scdiffeq.egg-info/PKG-INFO
scdiffeq.egg-info/SOURCES.txt
scdiffeq.egg-info/dependency_links.txt
scdiffeq.egg-info/requires.txt
scdiffeq.egg-info/top_level.txt
scdiffeq/core/__init__.py
scdiffeq/core/_scdiffeq.py
scdiffeq/core/_lightning_models/__init__.py
scdiffeq/core/_lightning_models/_batch_processor.py
scdiffeq/core/_lightning_models/_lightning_drift_net.py
scdiffeq/core/_lightning_models/_lightning_ode.py
scdiffeq/core/_lightning_models/_lightning_potential_sde.py
scdiffeq/core/_lightning_models/_lightning_sde.py
scdiffeq/core/_lightning_models/_lightning_sde_latent_potential.py
scdiffeq/core/_lightning_models/_lightning_vae_sde.py
scdiffeq/core/_lightning_models/_sinkhorn_divergence.py
scdiffeq/core/_lightning_models/base_models/__init__.py
scdiffeq/core/_lightning_models/base_models/_base_lightning_diffeq.py
scdiffeq/core/_lightning_models/base_models/_base_lightning_drift_net.py
scdiffeq/core/_lightning_models/base_models/_base_lightning_ode.py
scdiffeq/core/_lightning_models/base_models/_base_lightning_sde.py
scdiffeq/core/_lightning_models/base_models/_base_velocity_diffeq.py
scdiffeq/core/_lightning_models/mix_ins/__init__.py
scdiffeq/core/_lightning_models/mix_ins/_base_mix_in.py
scdiffeq/core/_lightning_models/mix_ins/_potential_mix_in.py
scdiffeq/core/_lightning_models/mix_ins/_pre_train_mix_in.py
scdiffeq/core/_lightning_models/mix_ins/_vae_mix_in.py
scdiffeq/core/_lightning_models/mix_ins/_vae_pre_train_mix_in.py
scdiffeq/core/callbacks/__init__.py
scdiffeq/core/callbacks/_gradient_potential_callback.py
scdiffeq/core/callbacks/_intermittent_saves.py
scdiffeq/core/callbacks/_loss_accounting.py
scdiffeq/core/callbacks/_testing.py
scdiffeq/core/configs/__init__.py
scdiffeq/core/configs/_function_credentialling.py
scdiffeq/core/configs/_lightning_callbacks_configuration.py
scdiffeq/core/configs/_lightning_data_configuration.py
scdiffeq/core/configs/_lightning_model_configuration.py
scdiffeq/core/configs/_lightning_model_configuration_v2.py
scdiffeq/core/configs/_lightning_trainer_configuration.py
scdiffeq/core/configs/_time_configuration.py
scdiffeq/core/lightning_models/__init__.py
scdiffeq/core/lightning_models/_lightning_ode.py
scdiffeq/core/lightning_models/_lightning_ode_fixed_potential.py
scdiffeq/core/lightning_models/_lightning_ode_prior_potential.py
scdiffeq/core/lightning_models/_lightning_ode_vae.py
scdiffeq/core/lightning_models/_lightning_ode_vae_fixed_potential.py
scdiffeq/core/lightning_models/_lightning_ode_vae_prior_potential.py
scdiffeq/core/lightning_models/_lightning_sde.py
scdiffeq/core/lightning_models/_lightning_sde_fixed_potential.py
scdiffeq/core/lightning_models/_lightning_sde_prior_potential.py
scdiffeq/core/lightning_models/_lightning_sde_vae.py
scdiffeq/core/lightning_models/_lightning_sde_vae_fixed_potential.py
scdiffeq/core/lightning_models/_lightning_sde_vae_prior_potential.py
scdiffeq/core/lightning_models/base/__init__.py
scdiffeq/core/lightning_models/base/_base_lightning_diffeq.py
scdiffeq/core/lightning_models/base/_batch_processor.py
scdiffeq/core/lightning_models/base/_sinkhorn_divergence.py
scdiffeq/core/lightning_models/mix_ins/__init__.py
scdiffeq/core/lightning_models/mix_ins/_base_forward_mix_in.py
scdiffeq/core/lightning_models/mix_ins/_drift_prior_mix_in.py
scdiffeq/core/lightning_models/mix_ins/_potential_mix_in.py
scdiffeq/core/lightning_models/mix_ins/_pre_train_mix_in.py
scdiffeq/core/lightning_models/mix_ins/_sde_mix_in.py
scdiffeq/core/lightning_models/mix_ins/_vae_mix_in.py
scdiffeq/core/utils/__init__.py
scdiffeq/core/utils/_abc_parse.py
scdiffeq/core/utils/_anndata_inspector.py
scdiffeq/core/utils/_autoparse_base_class.py
scdiffeq/core/utils/_default_neural_sde.py
scdiffeq/core/utils/_fast_graph.py
scdiffeq/core/utils/_fetch_format.py
scdiffeq/core/utils/_function_fetch.py
scdiffeq/core/utils/_function_kwargs.py
scdiffeq/core/utils/_info_message.py
scdiffeq/core/utils/_logging_learnable_hparams.py
scdiffeq/core/utils/_normalize_time_to_range.py
scdiffeq/core/utils/_not_none_type.py
scdiffeq/core/utils/_scdiffeq_logger.py
scdiffeq/core/utils/_sum_normalize.py
scdiffeq/io/__init__.py
scdiffeq/io/_pickle_io.py
scdiffeq/io/_read_h5ad.py
scdiffeq/plotting/__init__.py
scdiffeq/tools/__init__.py
scdiffeq/tools/_annotate_cells.py
scdiffeq/tools/_dimension_reduction.py
scdiffeq/tools/_drift_diffusion_state_characterization.py
scdiffeq/tools/_fetch.py
scdiffeq/tools/_func_from_version.py
scdiffeq/tools/_hyperparams.py
scdiffeq/tools/_reconstruct_function.py
scdiffeq/tools/_time_free_sampling.py
scdiffeq/tools/_umap.py
scdiffeq/tools/_versions.py