LICENSE.txt
README.rst
setup.py
scCellFie.egg-info/PKG-INFO
scCellFie.egg-info/SOURCES.txt
scCellFie.egg-info/dependency_links.txt
scCellFie.egg-info/requires.txt
scCellFie.egg-info/top_level.txt
sccellfie/__init__.py
sccellfie/gene_score.py
sccellfie/metabolic_task.py
sccellfie/reaction_activity.py
sccellfie/sccellfie_pipeline.py
sccellfie/communication/__init__.py
sccellfie/communication/colocalization_scoring.py
sccellfie/communication/traditional_scoring.py
sccellfie/communication/tests/__init__.py
sccellfie/communication/tests/test_colocalization_scoring.py
sccellfie/communication/tests/test_traditional_scoring.py
sccellfie/datasets/__init__.py
sccellfie/datasets/database.py
sccellfie/datasets/gene_info.py
sccellfie/datasets/toy_inputs.py
sccellfie/datasets/tests/__init__.py
sccellfie/datasets/tests/test_database.py
sccellfie/datasets/tests/test_gene_info.py
sccellfie/expression/__init__.py
sccellfie/expression/aggregation.py
sccellfie/expression/smoothing.py
sccellfie/expression/thresholds.py
sccellfie/expression/tests/__init__.py
sccellfie/expression/tests/test_aggregation.py
sccellfie/expression/tests/test_smoothing.py
sccellfie/expression/tests/test_threshold.py
sccellfie/external/__init__.py
sccellfie/external/tf_idf.py
sccellfie/external/tests/__init__.py
sccellfie/external/tests/test_tf_idf.py
sccellfie/io/__init__.py
sccellfie/io/load_data.py
sccellfie/io/save_data.py
sccellfie/io/tests/__init__.py
sccellfie/io/tests/test_load_data.py
sccellfie/io/tests/test_save_data.py
sccellfie/plotting/__init__.py
sccellfie/plotting/communication.py
sccellfie/plotting/differential_results.py
sccellfie/plotting/distributions.py
sccellfie/plotting/plot_utils.py
sccellfie/plotting/radial_plot.py
sccellfie/plotting/spatial.py
sccellfie/plotting/tests/__init__.py
sccellfie/plotting/tests/test_communication.py
sccellfie/plotting/tests/test_differential_results.py
sccellfie/plotting/tests/test_distributions.py
sccellfie/plotting/tests/test_plot_utils.py
sccellfie/plotting/tests/test_radial_plot.py
sccellfie/plotting/tests/test_spatial.py
sccellfie/preprocessing/__init__.py
sccellfie/preprocessing/adata_utils.py
sccellfie/preprocessing/database_manipulation.py
sccellfie/preprocessing/gpr_rules.py
sccellfie/preprocessing/matrix_utils.py
sccellfie/preprocessing/prepare_inputs.py
sccellfie/preprocessing/tests/__init__.py
sccellfie/preprocessing/tests/test_adata_utils.py
sccellfie/preprocessing/tests/test_database_manipulation.py
sccellfie/preprocessing/tests/test_gpr_rules.py
sccellfie/preprocessing/tests/test_matrix_utils.py
sccellfie/preprocessing/tests/test_prepare_inputs.py
sccellfie/reports/__init__.py
sccellfie/reports/summary.py
sccellfie/reports/tests/__init__.py
sccellfie/reports/tests/test_summary.py
sccellfie/spatial/__init__.py
sccellfie/spatial/assortativity.py
sccellfie/spatial/hotspots.py
sccellfie/spatial/knn_network.py
sccellfie/spatial/neighborhood.py
sccellfie/spatial/tests/__init__.py
sccellfie/spatial/tests/test_assortativity.py
sccellfie/spatial/tests/test_hotspots.py
sccellfie/spatial/tests/test_knn_network.py
sccellfie/spatial/tests/test_neighborhood.py
sccellfie/stats/__init__.py
sccellfie/stats/differential_analysis.py
sccellfie/stats/gam_analysis.py
sccellfie/stats/markers_from_task.py
sccellfie/stats/tests/__init__.py
sccellfie/stats/tests/test_differential_analysis.py
sccellfie/stats/tests/test_gam_analysis.py
sccellfie/stats/tests/test_markers_from_task.py
sccellfie/tests/__init__.py
sccellfie/tests/test_gene_score.py
sccellfie/tests/test_metabolic_task.py
sccellfie/tests/test_reaction_activity.py
sccellfie/tests/test_sccellfie_pipeline.py