Metadata-Version: 2.1
Name: scape-apa
Version: 1.0.0
Summary: A package for estimating alternative polyadenylation events from scRNA-seq data.
Author-email: "Guangzhao Cheng, Tien Le, Lu Cheng. Department of Computer Science, Aalto University." <lu.cheng.ac@gmail.com>
Project-URL: Homepage, https://github.com/chengl7-lab/scape
Project-URL: Bug Tracker, https://github.com/chengl7-lab/scape/issues
Classifier: Programming Language :: Python :: 3
Classifier: License :: OSI Approved :: MIT License
Classifier: Operating System :: OS Independent
Requires-Python: <3.11,>=3.9
Description-Content-Type: text/markdown
License-File: LICENSE
Requires-Dist: requests >2
Requires-Dist: gffutils >=0.11.1
Requires-Dist: pandas >=1.4.4
Requires-Dist: scipy >=1.9.3
Requires-Dist: numpy >=1.23.3
Requires-Dist: matplotlib >=3.6.2
Requires-Dist: click >=8.0.4
Requires-Dist: pysam >=0.19.0
Requires-Dist: taichi >=1.5.0
Requires-Dist: pybedtools >=0.9.0
Requires-Dist: psutil >=5.9.0

conda config --append channels bioconda 
conda config --append channels conda-forge 
conda create -n test_conda python=3.9
conda activate test_conda

conda install pip
conda install -c bioconda bedtools
pip install taichi
pip install .

scape --help
scape gen_utr_annotation --help

python -m scape --help
python -m scape gen_utr_annotation --help



