from ..tools._pca import pca
from ..tools._tsne import tsne
from ..tools._umap import umap
from ..tools._diffmap import diffmap
from ..tools._draw_graph import draw_graph

from ..tools._paga import (
    paga,
    paga_degrees,
    paga_expression_entropies,
    paga_compare_paths,
)
from ..tools._rank_genes_groups import rank_genes_groups
from ..tools._dpt import dpt
from ..tools._leiden import leiden
from ..tools._louvain import louvain
from ..tools._sim import sim
from ..tools._top_genes import correlation_matrix, ROC_AUC_analysis

from ..tools._score_genes import score_genes, score_genes_cell_cycle

from ..external.tl import cyclone, sandbag, phate, trimap
