from ..neighbors import neighbors

from ..preprocessing._recipes import recipe_zheng17, recipe_weinreb17, recipe_seurat
from ..preprocessing._simple import filter_cells, filter_genes
from ..preprocessing._deprecated.highly_variable_genes import filter_genes_dispersion
from ..preprocessing._highly_variable_genes import highly_variable_genes
from ..preprocessing._simple import (
    log1p,
    sqrt,
    normalize_per_cell,
    regress_out,
    scale,
    subsample,
    downsample_counts,
)
from ..preprocessing._pca import pca
from ..preprocessing._qc import calculate_qc_metrics
from ..preprocessing._combat import combat
from ..preprocessing._normalization import normalize_total

from ..external.pp import mnn_correct, bbknn, dca, magic
