Metadata-Version: 2.0
Name: scanpy
Version: 1.0.1
Summary: Single-Cell Analysis in Python.
Home-page: http://github.com/theislab/scanpy
Author: Alex Wolf, Philipp Angerer, Davide Cittaro, Gokcen Eraslan, Tobias Callies
Author-email: alex.wolf@helmholtz-muenchen.de
License: BSD
Description-Content-Type: UNKNOWN
Platform: UNKNOWN
Classifier: Development Status :: 5 - Production/Stable
Classifier: Environment :: Console
Classifier: Framework :: Jupyter
Classifier: Intended Audience :: Developers
Classifier: Intended Audience :: Science/Research
Classifier: Natural Language :: English
Classifier: Operating System :: MacOS :: MacOS X
Classifier: Operating System :: Microsoft :: Windows
Classifier: Operating System :: POSIX :: Linux
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.5
Classifier: Programming Language :: Python :: 3.6
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Classifier: Topic :: Scientific/Engineering :: Visualization
Requires-Dist: anndata (>=0.5.8)
Requires-Dist: matplotlib (>=2.2)
Requires-Dist: pandas (>=0.21)
Requires-Dist: scipy
Requires-Dist: seaborn
Requires-Dist: h5py
Requires-Dist: tables
Requires-Dist: scikit-learn (>=0.19.1)
Requires-Dist: statsmodels
Requires-Dist: networkx
Requires-Dist: natsort
Requires-Dist: joblib
Requires-Dist: numba

|Docs| |PyPI| |Build Status|

.. |Docs| image:: https://readthedocs.org/projects/scanpy/badge/?version=latest
   :target: https://scanpy.readthedocs.io
.. |PyPI| image:: https://badge.fury.io/py/scanpy.svg
    :target: https://pypi.python.org/pypi/scanpy
.. |Build Status| image:: https://travis-ci.org/theislab/scanpy.svg?branch=master
   :target: https://travis-ci.org/theislab/scanpy
..
   .. |Coverage| image:: https://codecov.io/gh/theislab/scanpy/branch/master/graph/badge.svg
      :target: https://codecov.io/gh/theislab/scanpy

Scanpy – Single-Cell Analysis in Python
=======================================

.. raw:: html

   <p>
   <img src="http://falexwolf.de/img/tsne_1.3M.png" style="width: 100px; margin: 10px 10px 5px 5px" align="left">
   Scanpy is a scalable toolkit for analyzing single-cell gene expression
   data. It includes preprocessing, visualization, clustering, pseudotime and
   trajectory inference, differential expression testing and simulation of gene
   regulatory networks. The Python-based implementation efficiently deals with
   datasets of more than one million cells.
   </p>

Read the `documentation <https://scanpy.readthedocs.io>`_.
If Scanpy is useful for your research, consider citing `Genome Biology (2018) <https://doi.org/10.1186/s13059-017-1382-0>`_.


