MANIFEST.in
README.md
requirements.txt
setup.py
/Users/ckw/Desktop/project/strake/未命名/sc3dg/pairtools/lib/dedup_cython.c
/Users/ckw/Desktop/project/strake/未命名/sc3dg/pairtools/lib/regions.cpp
sc3dg/BarcodeIdentification_v1.2.0.jar
sc3dg/__init__.py
sc3dg/cli.py
sc3dg.egg-info/PKG-INFO
sc3dg.egg-info/SOURCES.txt
sc3dg.egg-info/dependency_links.txt
sc3dg.egg-info/entry_points.txt
sc3dg.egg-info/requires.txt
sc3dg.egg-info/top_level.txt
sc3dg/commands/__init__.py
sc3dg/commands/accum.py
sc3dg/commands/count.py
sc3dg/commands/gini.py
sc3dg/commands/impute.py
sc3dg/commands/index.py
sc3dg/commands/merge.py
sc3dg/commands/model.py
sc3dg/commands/nDS.py
sc3dg/commands/ssce.py
sc3dg/model/dyn_util.c
sc3dg/model/dyn_util.pyx
sc3dg/pairtools/__init__.py
sc3dg/pairtools/__main__.py
sc3dg/pairtools/_logging.py
sc3dg/pairtools/cli/__init__.py
sc3dg/pairtools/cli/dedup.py
sc3dg/pairtools/cli/filterbycov.py
sc3dg/pairtools/cli/flip.py
sc3dg/pairtools/cli/header.py
sc3dg/pairtools/cli/markasdup.py
sc3dg/pairtools/cli/merge.py
sc3dg/pairtools/cli/parse.py
sc3dg/pairtools/cli/parse2.py
sc3dg/pairtools/cli/phase.py
sc3dg/pairtools/cli/restrict.py
sc3dg/pairtools/cli/sample.py
sc3dg/pairtools/cli/scaling.py
sc3dg/pairtools/cli/select.py
sc3dg/pairtools/cli/sort.py
sc3dg/pairtools/cli/split.py
sc3dg/pairtools/cli/stats.py
sc3dg/pairtools/lib/__init__.py
sc3dg/pairtools/lib/dedup.py
sc3dg/pairtools/lib/dedup_cython.pyx
sc3dg/pairtools/lib/fileio.py
sc3dg/pairtools/lib/filterbycov.py
sc3dg/pairtools/lib/headerops.py
sc3dg/pairtools/lib/pairsam_format.py
sc3dg/pairtools/lib/parse.py
sc3dg/pairtools/lib/parse_pysam.c
sc3dg/pairtools/lib/parse_pysam.pyx
sc3dg/pairtools/lib/phase.py
sc3dg/pairtools/lib/regions.pyx
sc3dg/pairtools/lib/restrict.py
sc3dg/pairtools/lib/scaling.py
sc3dg/pairtools/lib/select.py
sc3dg/pairtools/lib/stats.py
sc3dg/utils/Generate_scNanoHIC_pairs.py
sc3dg/utils/ReformSAM.py
sc3dg/utils/__init__.py
sc3dg/utils/analysis.py
sc3dg/utils/assembly.py
sc3dg/utils/download.py
sc3dg/utils/embedding.py
sc3dg/utils/general.py
sc3dg/utils/gini.py
sc3dg/utils/help.py
sc3dg/utils/plot.py
sc3dg/utils/scMethyl.py
sc3dg/utils/scNano.py
sc3dg/utils/scNano_barcode.py
sc3dg/utils/scSPRITE.py
sc3dg/utils/scaffold.py
sc3dg/utils/sciHic.py
sc3dg/utils/sn_m3c.py
sc3dg/utils/tools.py
sc3dg/utils/visualize.py