README.md
setup.py
sc3dg/__init__.py
sc3dg/cli.py
sc3dg.egg-info/PKG-INFO
sc3dg.egg-info/SOURCES.txt
sc3dg.egg-info/dependency_links.txt
sc3dg.egg-info/entry_points.txt
sc3dg.egg-info/requires.txt
sc3dg.egg-info/top_level.txt
sc3dg/analysis/api.py
sc3dg/analysis/embedding.py
sc3dg/analysis/genome.py
sc3dg/commands/__init__.py
sc3dg/commands/accum.py
sc3dg/commands/count.py
sc3dg/commands/gini.py
sc3dg/commands/impute.py
sc3dg/commands/make_index.py
sc3dg/commands/merge.py
sc3dg/commands/model.py
sc3dg/commands/nDS.py
sc3dg/commands/ssce.py
sc3dg/model/dyn_util.c
sc3dg/model/nuc_dynamics.py
sc3dg/model/setup_cython.py
sc3dg/utils/Generate_scNanoHIC_pairs.py
sc3dg/utils/ReformSAM.py
sc3dg/utils/__init__.py
sc3dg/utils/analysis.py
sc3dg/utils/assembly.py
sc3dg/utils/download.py
sc3dg/utils/embedding.py
sc3dg/utils/general.py
sc3dg/utils/gini.py
sc3dg/utils/help.py
sc3dg/utils/plot.py
sc3dg/utils/scMethyl.py
sc3dg/utils/scNano.py
sc3dg/utils/scNano_barcode.py
sc3dg/utils/scSPRITE.py
sc3dg/utils/scaffold.py
sc3dg/utils/sciHic.py
sc3dg/utils/sn_m3c.py
sc3dg/utils/tools.py
sc3dg/utils/visualize.py