README.md
setup.py
sc3dg/__init__.py
sc3dg/cli.py
sc3dg.egg-info/PKG-INFO
sc3dg.egg-info/SOURCES.txt
sc3dg.egg-info/dependency_links.txt
sc3dg.egg-info/entry_points.txt
sc3dg.egg-info/requires.txt
sc3dg.egg-info/top_level.txt
sc3dg/analysis/api.py
sc3dg/analysis/embedding.py
sc3dg/analysis/genome.py
sc3dg/commands/count.py
sc3dg/commands/impute.py
sc3dg/commands/model1.py
sc3dg/commands/model2.py
sc3dg/model/STARK_dyn_3dg.py
sc3dg/model/STARK_nuc_dynamics.py
sc3dg/model/__init__.py
sc3dg/model/align.py
sc3dg/model/ard.py
sc3dg/model/bincon.py
sc3dg/model/classes.py
sc3dg/model/clean.py
sc3dg/model/clean3.py
sc3dg/model/color.py
sc3dg/model/color2.py
sc3dg/model/con.py
sc3dg/model/con3.py
sc3dg/model/cv.py
sc3dg/model/dedup.py
sc3dg/model/dedup_pairs.py
sc3dg/model/dist.py
sc3dg/model/exp.py
sc3dg/model/force.py
sc3dg/model/generate_cif.py
sc3dg/model/info.py
sc3dg/model/make_3dg.py
sc3dg/model/mgcolor.py
sc3dg/model/mkcon.py
sc3dg/model/pd.py
sc3dg/model/pos.py
sc3dg/model/reg.py
sc3dg/model/reg3.py
sc3dg/model/rg.py
sc3dg/model/seg.py
sc3dg/model/tad.py
sc3dg/model/vis.py
sc3dg/utils/Generate_scNanoHIC_pairs.py
sc3dg/utils/ReformSAM.py
sc3dg/utils/__init__.py
sc3dg/utils/analysis.py
sc3dg/utils/assembly.py
sc3dg/utils/download.py
sc3dg/utils/embedding.py
sc3dg/utils/general.py
sc3dg/utils/help.py
sc3dg/utils/plot.py
sc3dg/utils/scMethyl.py
sc3dg/utils/scNano.py
sc3dg/utils/scNano_barcode.py
sc3dg/utils/scSPRITE.py
sc3dg/utils/scaffold.py
sc3dg/utils/sciHic.py
sc3dg/utils/sn_m3c.py
sc3dg/utils/tools.py
sc3dg/utils/visualize.py