.gitignore
.travis.yml
LICENSE
MANIFEST.in
README.md
SBstoat_logo.png
jn
lint
profile.sh
requirements.txt
runHarness.sh
setup.cfg
setup.py
SBstoat/__init__.py
SBstoat/_bootstrapResult.py
SBstoat/_bootstrapRunner.py
SBstoat/_constants.py
SBstoat/_helpers.py
SBstoat/_layoutManager.py
SBstoat/_modelFitterBootstrap.py
SBstoat/_modelFitterCore.py
SBstoat/_modelFitterCrossValidator.py
SBstoat/_modelFitterReport.py
SBstoat/_optimizer.py
SBstoat/_parallelRunner.py
SBstoat/_plotOptions.py
SBstoat/_statementManager.py
SBstoat/_testHarness.py
SBstoat/_version.py
SBstoat/abstractCrossValidator.py
SBstoat/logs.py
SBstoat/mainTestHarness.py
SBstoat/modelFitter.py
SBstoat/modelStudy.py
SBstoat/namedTimeseries.py
SBstoat/observationSynthesizer.py
SBstoat/processLog.sh
SBstoat/residualsAnalyzer.py
SBstoat/rpickle.py
SBstoat/suiteFitter.py
SBstoat/timeseriesPlotter.py
SBstoat/timeseriesStatistic.py
SBstoat.egg-info/PKG-INFO
SBstoat.egg-info/SOURCES.txt
SBstoat.egg-info/dependency_links.txt
SBstoat.egg-info/requires.txt
SBstoat.egg-info/top_level.txt
biomodels/biomodels.zip
bugs/01-22-2021/StoatSynC.exp
bugs/01-22-2021/modular_EGFR_current_128_stoat.py
bugs/01-22-2021/modular_EGFR_current_128_stoat_rev1.py
bugs/01-22-2021/modular_EGFR_current_128_stoat_rev2.py
bugs/03-18-2021/Ras1.stoat
bugs/03-18-2021/Ras1_4.py
bugs/03-18-2021/Ras2.stoat
bugs/03-18-2021/Ras3.stoat
bugs/03-18-2021/Ras4.stoat
bugs/mike_02192021/Analysis of Fitting.ipynb
bugs/mike_02192021/spry2_2a.txt
bugs/mike_02192021/stoatSpry2.py
bugs/mike_02192021/stoatSpry2.txt
examples/virus/About _data_and_model.pdf
examples/virus/Analyze Biomodels.ipynb
examples/virus/Extensions for Model Fitting.ipynb
examples/virus/Influenza.csv
examples/virus/Model_target_cell_limited.py
examples/virus/SARS.csv
examples/virus/SARS_CoV2_nasal.csv
examples/virus/SARS_CoV2_sputum.csv
examples/virus/SARS_analysis.ipynb
examples/virus/SARS_analysis.py
examples/virus/influenza_analysis.py
examples/virus/virus_analysis.ipynb
examples/virus/ModelStudyFitters/P1.pcl
examples/virus/ModelStudyFitters/P2.pcl
examples/virus/ModelStudyFitters/P3.pcl
examples/virus/ModelStudyFitters/P4.pcl
examples/virus/ModelStudyFitters/P5.pcl
examples/virus/ModelStudyFitters/P6.pcl
examples/virus/ModelStudyFitters_01/P1.pcl
examples/virus/ModelStudyFitters_01/P2.pcl
examples/virus/ModelStudyFitters_01/P3.pcl
examples/virus/ModelStudyFitters_01/P4.pcl
examples/virus/ModelStudyFitters_01/P5.pcl
examples/virus/ModelStudyFitters_01/P6.pcl
examples/virus/SARS_StudyFitters_01/P1.pcl
examples/virus/SARS_StudyFitters_01/P2.pcl
examples/virus/SARS_StudyFitters_01/P3.pcl
examples/virus/SARS_StudyFitters_01/P4.pcl
examples/virus/SARS_StudyFitters_01/P5.pcl
examples/virus/SARS_StudyFitters_01/P6.pcl
examples/virus/SARS_StudyFitters_01/P7.pcl
examples/virus/SARS_StudyFitters_01/P8.pcl
examples/virus/SARS_StudyFitters_01/P9.pcl
examples/virus/SimpleModelFitters/P1.pcl
examples/virus/SimpleModelFitters/P2.pcl
examples/virus/SimpleModelFitters/P3.pcl
examples/virus/SimpleModelFitters/P4.pcl
examples/virus/SimpleModelFitters/P5.pcl
examples/virus/SimpleModelFitters/P6.pcl
examples/virus/SimpleModelFitters_01/P1.pcl
examples/virus/SimpleModelFitters_01/P2.pcl
examples/virus/SimpleModelFitters_01/P3.pcl
examples/virus/SimpleModelFitters_01/P4.pcl
examples/virus/SimpleModelFitters_01/P5.pcl
examples/virus/SimpleModelFitters_01/P6.pcl
notebooks/Tutorial on Utilities for Model Fitting.ipynb
notebooks/new_data.csv
notebooks/tst_data.txt
tests/BIOMD0000000339.xml
tests/Jana_WolfGlycolysis.antimony
tests/__init__.py
tests/_testConstants.py
tests/_testHelpers.py
tests/benchmarkModelFitter.py
tests/data_file2.csv
tests/groundtruth_2_step_0_1.txt
tests/mike_bug.csv
tests/testAbstractCrossValidator.py
tests/testBootstrapResult.py
tests/testBootstrapRunner.py
tests/testHelpers.py
tests/testLayoutManager.py
tests/testLogs.py
tests/testMainTestHarness.py
tests/testModelFitter.py
tests/testModelFitterBootstrap.py
tests/testModelFitterCore.py
tests/testModelFitterCrossValidator.py
tests/testModelFitterReport.py
tests/testModelStudy.py
tests/testNamedTimeseries.py
tests/testObservationSynthesizer.py
tests/testOptimizer.py
tests/testParallelRunner.py
tests/testPlotOptions.py
tests/testResidualsAnalyzer.py
tests/testRpickle.py
tests/testStatementManager.py
tests/testSuiteFitter.py
tests/testTestHarness.py
tests/testTimeseriesPlotter.py
tests/testTimeseriesStatistic.py
tests/tst_data.txt
tests/wolf_data.csv