LICENSE
MANIFEST.in
README.md
README_pip.md
setup.cfg
setup.py
rrmscorer/__init__.py
rrmscorer/__main__.py
rrmscorer/main_testing.py
rrmscorer/rrm_rna_functions.py
rrmscorer.egg-info/PKG-INFO
rrmscorer.egg-info/SOURCES.txt
rrmscorer.egg-info/dependency_links.txt
rrmscorer.egg-info/requires.txt
rrmscorer.egg-info/top_level.txt
rrmscorer/alignment_data/.DS_Store
rrmscorer/alignment_data/RNAs_aligned_cluster_0_nt_full_refined.fasta
rrmscorer/alignment_data/RRM_master_interaction_info_with_nt_unbiased_cluster_0.json
rrmscorer/alignment_data/cluster_0_contacts_values_for_confidence.json
rrmscorer/alignment_data/leave-one-out_negative_scores_avg_perc_20.txt
rrmscorer/alignment_data/leave-one-out_positive_scores_avg_perc_20.txt
rrmscorer/alignment_data/leave_one_out_neg_confidence_scores.txt
rrmscorer/alignment_data/leave_one_out_pos_confidence_scores.txt
rrmscorer/alignment_data/neighbours_rna_cluster_0.json
rrmscorer/alignment_data/rrm_bound.hmm
rrmscorer/alignment_data/rrm_bound.hmm.h3f
rrmscorer/alignment_data/rrm_bound.hmm.h3i
rrmscorer/alignment_data/rrm_bound.hmm.h3m
rrmscorer/alignment_data/rrm_bound.hmm.h3p
rrmscorer/alignment_data/rrm_bound_domains_aligned_processed_squeezed.fasta
rrmscorer/alignment_data/sxl_seqs_phage_display_A1_aligned.fasta
rrmscorer/alignment_data/precalculated_scores/122_5.pkl
rrmscorer/alignment_data/precalculated_scores/122_6.pkl
rrmscorer/alignment_data/precalculated_scores/124_5.pkl
rrmscorer/alignment_data/precalculated_scores/124_6.pkl
rrmscorer/alignment_data/precalculated_scores/126_6.pkl
rrmscorer/alignment_data/precalculated_scores/135_3.pkl
rrmscorer/alignment_data/precalculated_scores/137_3.pkl
rrmscorer/alignment_data/precalculated_scores/137_5.pkl
rrmscorer/alignment_data/precalculated_scores/139_4.pkl
rrmscorer/alignment_data/precalculated_scores/139_5.pkl
rrmscorer/alignment_data/precalculated_scores/141_5.pkl
rrmscorer/alignment_data/precalculated_scores/166_2.pkl
rrmscorer/alignment_data/precalculated_scores/169_2.pkl
rrmscorer/alignment_data/precalculated_scores/169_3.pkl
rrmscorer/alignment_data/precalculated_scores/171_3.pkl
rrmscorer/alignment_data/precalculated_scores/171_4.pkl
rrmscorer/alignment_data/precalculated_scores/173_4.pkl
rrmscorer/alignment_data/precalculated_scores/173_5.pkl
rrmscorer/alignment_data/precalculated_scores/174_4.pkl
rrmscorer/alignment_data/precalculated_scores/175_4.pkl
rrmscorer/alignment_data/precalculated_scores/175_5.pkl
rrmscorer/alignment_data/precalculated_scores/176_5.pkl
rrmscorer/alignment_data/precalculated_scores/177_5.pkl
rrmscorer/alignment_data/precalculated_scores/77_5.pkl
rrmscorer/alignment_data/precalculated_scores/79_3.pkl
rrmscorer/alignment_data/precalculated_scores/79_4.pkl
rrmscorer/alignment_data/precalculated_scores/81_3.pkl
rrmscorer/alignment_data/precalculated_scores/82_2.pkl
rrmscorer/alignment_data/precalculated_scores/82_3.pkl
rrmscorer/alignment_data/precalculated_scores/90_2.pkl
rrmscorer/output_files/out_test_mapali.stockholm
test/test.py
test/input_files/4ED5.fasta
test/input_files/not_RRM.fasta
test/input_files/rrm_seq.fasta