[console_scripts]
collect-read-length-orf-profiles = rpbp.analysis.profile_construction.collect_read_length_orf_profiles:main
compile-rpbp-models = rpbp.ribo_utils.compile_rpbp_models:main
create-base-genome-profile = rpbp.orf_profile_construction.create_base_genome_profile:main
create-orf-profiles = rpbp.orf_profile_construction.create_orf_profiles:main
create-read-length-orf-profiles = rpbp.analysis.profile_construction.create_read_length_orf_profiles:main
estimate-metagene-profile-bayes-factors = rpbp.orf_profile_construction.estimate_metagene_profile_bayes_factors:main
estimate-orf-bayes-factors = rpbp.translation_prediction.estimate_orf_bayes_factors:main
extract-metagene-profiles = rpbp.orf_profile_construction.extract_metagene_profiles:main
extract-orf-coordinates = rpbp.reference_preprocessing.extract_orf_coordinates:main
extract-orf-profiles = rpbp.orf_profile_construction.extract_orf_profiles:main
filter-nonunique-peptide-matches = rpbp.analysis.proteomics.filter_nonunique_peptide_matches:main
get-all-orf-peptide-matches = rpbp.analysis.proteomics.get_all_orf_peptide_matches:main
get-all-read-filtering-counts = rpbp.analysis.profile_construction.get_all_read_filtering_counts:main
get-orf-peptide-matches = rpbp.analysis.proteomics.get_orf_peptide_matches:main
label-orfs = rpbp.reference_preprocessing.label_orfs:main
merge-replicate-orf-profiles = rpbp.translation_prediction.merge_replicate_orf_profiles:main
predict-translated-orfs = rpbp.translation_prediction.predict_translated_orfs:main
prepare-rpbp-genome = rpbp.reference_preprocessing.prepare_rpbp_genome:main
rpbp-predictions-dashboard = rpbp.analysis.rpbp_predictions.dashboard.rpbp_predictions_dashboard:main
rpbp-profile-construction-dashboard = rpbp.analysis.profile_construction.dashboard.rpbp_profile_construction_dashboard:main
run-all-rpbp-instances = rpbp.run_all_rpbp_instances:main
run-rpbp-pipeline = rpbp.run_rpbp_pipeline:main
select-final-prediction-set = rpbp.translation_prediction.select_final_prediction_set:main
select-periodic-offsets = rpbp.orf_profile_construction.select_periodic_offsets:main
summarize-rpbp-predictions = rpbp.analysis.rpbp_predictions.summarize_rpbp_predictions:main
summarize-rpbp-profile-construction = rpbp.analysis.profile_construction.summarize_rpbp_profile_construction:main
visualize-metagene-profile-bayes-factor = rpbp.analysis.profile_construction.visualize_metagene_profile_bayes_factor:main
visualize-orf-type-metagene-profiles = rpbp.analysis.rpbp_predictions.visualize_orf_type_metagene_profiles:main
