MANIFEST.in
README.md
setup.cfg
setup.py
rose2/__init__.py
rose2/genemapper.py
rose2/utils.py
rose2.egg-info/PKG-INFO
rose2.egg-info/SOURCES.txt
rose2.egg-info/dependency_links.txt
rose2.egg-info/entry_points.txt
rose2.egg-info/requires.txt
rose2.egg-info/top_level.txt
rose2/annotation/danRer7_refseq.ucsc
rose2/annotation/hg18_refseq.ucsc
rose2/annotation/hg19.chrom.sizes
rose2/annotation/hg19_refseq.ucsc
rose2/annotation/hg38_refseq.ucsc
rose2/annotation/mm10.chrom.sizes
rose2/annotation/mm10_refseq.ucsc
rose2/annotation/mm8_refseq.ucsc
rose2/annotation/mm9_refseq.ucsc
rose2/annotation/rn4_refseq.ucsc
rose2/annotation/ucsc_chromSize.txt
scripts/ROSE2_callSuper.R
scripts/ROSE2_stitchOpt.R