MANIFEST.in
README.md
pyproject.toml
setup.cfg
setup.py
versioneer.py
RNAdist/__init__.py
RNAdist/_version.py
RNAdist/executables.py
RNAdist/fasta_wrappers.py
RNAdist.egg-info/PKG-INFO
RNAdist.egg-info/SOURCES.txt
RNAdist.egg-info/dependency_links.txt
RNAdist.egg-info/entry_points.txt
RNAdist.egg-info/requires.txt
RNAdist.egg-info/top_level.txt
RNAdist/cpp/RNAHelpers.cpp
RNAdist/cpp/RNAHelpers.h
RNAdist/dp/__init__.py
RNAdist/dp/_dp_calculations.c
RNAdist/dp/_dp_calculations.pyx
RNAdist/dp/cpedistance.py
RNAdist/dp/pmcomp.py
RNAdist/dp/viennarna_helpers.py
RNAdist/dp/cpp/clotePontyExpectedDistance.cpp
RNAdist/dp/cpp/clotePontyExpectedDistance.h
RNAdist/dp/cpp/pyClotePontyExpectedDistance.cpp
RNAdist/dp/cpp/pyStructuralProbabilities.cpp
RNAdist/dp/cpp/structuralProbabilities.cpp
RNAdist/dp/cpp/structuralProbabilities.h
RNAdist/dp/tests/fixtures.py
RNAdist/dp/tests/test_dp_models.py
RNAdist/dp/tests/test_helpers.py
RNAdist/sampling/__init__.py
RNAdist/sampling/ed_sampling.py
RNAdist/sampling/cpp/RNAGraph.cpp
RNAdist/sampling/cpp/RNAGraph.h
RNAdist/sampling/cpp/edsampling.cpp
RNAdist/sampling/cpp/edsampling.h
RNAdist/sampling/cpp/pyedsampling.cpp
RNAdist/sampling/cpp/sampling.h
RNAdist/sampling/tests/test_sampling.py
RNAdist/tests/fasta_fixtures.py
RNAdist/tests/test_executables.py
RNAdist/tests/test_fasta_wrappers.py
RNAdist/tests/test_data/bed_test.bed
RNAdist/tests/test_data/bed_test.fa
RNAdist/tests/test_data/example_output.pckl
RNAdist/tests/test_data/random_test.fa
RNAdist/visualize/__init__.py
RNAdist/visualize/visualize.py
RNAdist/visualize/assets/RNAdistVisualizer_dark.svg
RNAdist/visualize/assets/favicon.ico
RNAdist/visualize/assets/index.html
RNAdist/visualize/assets/style.css