MANIFEST.in
README.md
pyproject.toml
setup.cfg
setup.py
versioneer.py
./RNAdist/__init__.py
./RNAdist/_version.py
./RNAdist/distattencione_executables.py
./RNAdist/executables.py
./RNAdist/fasta_wrappers.py
./RNAdist/dp/__init__.py
./RNAdist/dp/cpedistance.py
./RNAdist/dp/pmcomp.py
./RNAdist/dp/viennarna_helpers.py
./RNAdist/dp/tests/fixtures.py
./RNAdist/dp/tests/test_dp_models.py
./RNAdist/dp/tests/test_helpers.py
./RNAdist/nn/DISTAtteNCionE.py
./RNAdist/nn/Datasets.py
./RNAdist/nn/__init__.py
./RNAdist/nn/configuration.py
./RNAdist/nn/prediction.py
./RNAdist/nn/smac_helpers.py
./RNAdist/nn/smac_optimize.py
./RNAdist/nn/training.py
./RNAdist/nn/training_set_generation.py
./RNAdist/nn/tests/data_fixtures.py
./RNAdist/nn/tests/test_data_generation.py
./RNAdist/nn/tests/test_datasets.py
./RNAdist/nn/tests/test_models.py
./RNAdist/nn/tests/test_prediction.py
./RNAdist/nn/tests/test_smac.py
./RNAdist/nn/tests/test_training.py
./RNAdist/nn/tests/test_data/random_test.fa
./RNAdist/nn/tests/test_data/rna_tensor.pt
./RNAdist/nn/tests/test_data/test_model.pt
./RNAdist/nn/tests/test_data/test_model_no_bpp.pt
./RNAdist/nn/tests/test_data/expected_labels/index.pt
./RNAdist/nn/tests/test_data/expected_labels/labels_0
./RNAdist/nn/tests/test_data/expected_labels/labels_1
./RNAdist/nn/tests/test_data/expected_labels/labels_2
./RNAdist/nn/tests/test_data/expected_labels/labels_3
./RNAdist/nn/tests/test_data/expected_labels/labels_4
./RNAdist/nn/tests/test_data/expected_labels/labels_5
./RNAdist/nn/tests/test_data/expected_labels/labels_6
./RNAdist/nn/tests/test_data/expected_labels/labels_7
./RNAdist/nn/tests/test_data/expected_labels/labels_8
./RNAdist/nn/tests/test_data/expected_labels/labels_9
./RNAdist/nn/tests/test_data/expected_window_labels/config.pt
./RNAdist/nn/tests/test_data/expected_window_labels/index.pt
./RNAdist/nn/tests/test_data/expected_window_labels/labels_0
./RNAdist/nn/tests/test_data/expected_window_labels/labels_1
./RNAdist/nn/tests/test_data/expected_window_labels/labels_2
./RNAdist/nn/tests/test_data/expected_window_labels/labels_3
./RNAdist/nn/tests/test_data/expected_window_labels/labels_4
./RNAdist/nn/tests/test_data/expected_window_labels/labels_5
./RNAdist/nn/tests/test_data/expected_window_labels/labels_6
./RNAdist/nn/tests/test_data/expected_window_labels/labels_7
./RNAdist/nn/tests/test_data/expected_window_labels/labels_8
./RNAdist/nn/tests/test_data/expected_window_labels/labels_9
./RNAdist/sampling/__init__.py
./RNAdist/sampling/ed_sampling.py
./RNAdist/sampling/tests/test_sampling.py
./RNAdist/tests/fasta_fixtures.py
./RNAdist/tests/test_executables.py
./RNAdist/tests/test_fasta_wrappers.py
./RNAdist/tests/test_data/bed_test.bed
./RNAdist/tests/test_data/bed_test.fa
./RNAdist/tests/test_data/example_output.pckl
./RNAdist/visualize/__init__.py
./RNAdist/visualize/visualize.py
./RNAdist/visualize/assets/RNAdistVisualizer_dark.svg
./RNAdist/visualize/assets/favicon.ico
./RNAdist/visualize/assets/index.html
./RNAdist/visualize/assets/style.css
CPExpectedDistance/CPExpectedDistance/__init__.py
CPExpectedDistance/CPExpectedDistance/_version.py
CPExpectedDistance/CPExpectedDistance/c_expected_distance.c
CPExpectedDistance/CPExpectedDistance/p_expected_distance.py
CPExpectedDistance/CPExpectedDistance/tests/test_expected_distance.py
RNAdist/__init__.py
RNAdist/_version.py
RNAdist/distattencione_executables.py
RNAdist/executables.py
RNAdist/fasta_wrappers.py
RNAdist.egg-info/PKG-INFO
RNAdist.egg-info/SOURCES.txt
RNAdist.egg-info/dependency_links.txt
RNAdist.egg-info/entry_points.txt
RNAdist.egg-info/requires.txt
RNAdist.egg-info/top_level.txt
RNAdist/dp/_dp_calculations.c
RNAdist/dp/_dp_calculations.pyx
RNAdist/dp/tests/fixtures.py
RNAdist/dp/tests/test_dp_models.py
RNAdist/dp/tests/test_helpers.py
RNAdist/nn/nn_helpers.cpp
RNAdist/nn/tests/data_fixtures.py
RNAdist/nn/tests/test_data_generation.py
RNAdist/nn/tests/test_datasets.py
RNAdist/nn/tests/test_models.py
RNAdist/nn/tests/test_prediction.py
RNAdist/nn/tests/test_smac.py
RNAdist/nn/tests/test_training.py
RNAdist/nn/tests/test_data/random_test.fa
RNAdist/nn/tests/test_data/rna_tensor.pt
RNAdist/nn/tests/test_data/test_model.pt
RNAdist/nn/tests/test_data/test_model_no_bpp.pt
RNAdist/sampling/__init__.py
RNAdist/sampling/cpp/RNAGraph.cpp
RNAdist/sampling/cpp/RNAGraph.h
RNAdist/sampling/cpp/edsampling.cpp
RNAdist/sampling/cpp/edsampling.h
RNAdist/sampling/cpp/pyedsampling.cpp
RNAdist/sampling/cpp/sampling.cpp
RNAdist/sampling/cpp/sampling.h
RNAdist/sampling/tests/test_sampling.py
RNAdist/tests/fasta_fixtures.py
RNAdist/tests/test_executables.py
RNAdist/tests/test_fasta_wrappers.py
RNAdist/tests/test_data/bed_test.bed
RNAdist/tests/test_data/bed_test.fa
RNAdist/tests/test_data/example_output.pckl
RNAdist/visualize/__init__.py
RNAdist/visualize/visualize.py
RNAdist/visualize/assets/RNAdistVisualizer_dark.svg
RNAdist/visualize/assets/favicon.ico
RNAdist/visualize/assets/index.html
RNAdist/visualize/assets/style.css