README.md
setup.py
RiboParser.egg-info/PKG-INFO
RiboParser.egg-info/SOURCES.txt
RiboParser.egg-info/dependency_links.txt
RiboParser.egg-info/entry_points.txt
RiboParser.egg-info/requires.txt
RiboParser.egg-info/top_level.txt
scripts/__init__.py
scripts/bedgraph/__init__.py
scripts/bedgraph/bg2meta.py
scripts/bedgraph/rpm_smooth.py
scripts/bowtie/__init__.py
scripts/bowtie/merge_bwt_log.py
scripts/fasta/__init__.py
scripts/fasta/fa_gc_sum.py
scripts/fasta/fa_len_flt.py
scripts/fasta/fa_len_sum.py
scripts/fasta/fa_split.py
scripts/fasta/line_feed.py
scripts/fasta/nt2aa.py
scripts/fasta/rand_seq.py
scripts/fasta/retrieve_seq.py
scripts/fasta/revs.py
scripts/fastq/__init__.py
scripts/fastq/fq2fa.py
scripts/fastq/fq2txt.py
scripts/fastq/fq_len_flt.py
scripts/fastq/fq_len_sum.py
scripts/fastq/fq_split.py
scripts/fastq/fq_trim.py
scripts/fastq/phred_quality.py
scripts/merge_ribo/__init__.py
scripts/merge_ribo/merge_cdt.py
scripts/merge_ribo/merge_coverage.py
scripts/merge_ribo/merge_cst.py
scripts/merge_ribo/merge_digestion.py
scripts/merge_ribo/merge_dst_list.py
scripts/merge_ribo/merge_length.py
scripts/merge_ribo/merge_metagene.py
scripts/merge_ribo/merge_occupancy.py
scripts/merge_ribo/merge_odd_ratio.py
scripts/merge_ribo/merge_offset.py
scripts/merge_ribo/merge_offset_detail.py
scripts/merge_ribo/merge_offset_end.py
scripts/merge_ribo/merge_pausing.py
scripts/merge_ribo/merge_period.py
scripts/merge_ribo/merge_quant.py
scripts/merge_ribo/merge_saturation.py
scripts/oligo/__init__.py
scripts/oligo/get_overlap_seq.py
scripts/oligo/get_tissue_freq.py
scripts/oligo/get_win_seq.py
scripts/ribocode/__init__.py
scripts/ribocode/ribocode_bed_format.py
scripts/ribotish/__init__.py
scripts/ribotish/ribotish_format.py
scripts/rsem/__init__.py
scripts/rsem/merge_rsem.py
scripts/unix/__init__.py
scripts/unix/dos2unix.py
utils/__init__.py
utils/make_ensb_ref.py
utils/make_ribo_ref.py
utils/ribo_parser.py
utils/rna_Density.py
utils/rna_Offset.py
utils/rpf_Bam2bw.py
utils/rpf_Bam_Filter.py
utils/rpf_CDT.py
utils/rpf_CST.py
utils/rpf_Check.py
utils/rpf_CoV.py
utils/rpf_Corr.py
utils/rpf_Coverage.py
utils/rpf_Cumulative_CoV.py
utils/rpf_Density.py
utils/rpf_Digest.py
utils/rpf_Geneplot.py
utils/rpf_Merge.py
utils/rpf_Meta_Codon.py
utils/rpf_Metaplot.py
utils/rpf_Occupancy.py
utils/rpf_Odd_Ratio.py
utils/rpf_Offset.py
utils/rpf_Offset_RSBM.py
utils/rpf_Pausing.py
utils/rpf_Periodicity.py
utils/rpf_Quant.py
utils/rpf_Reference.py
utils/rpf_Retrieve.py
utils/rpf_Shuffle.py
utils/rpf_end.py
utils/serp_overlap.py
utils/serp_peak.py
utils/serp_properties.py
utils/ribo/ArgsParser.py
utils/ribo/Bam2Wig.py
utils/ribo/BamFilter.py
utils/ribo/CDT.py
utils/ribo/CST.py
utils/ribo/Codon.py
utils/ribo/Coefficient_of_Variation.py
utils/ribo/Coverage.py
utils/ribo/Cumulative_CoV.py
utils/ribo/Density.py
utils/ribo/Digestion.py
utils/ribo/Ensembl_Ref.py
utils/ribo/GenePred.py
utils/ribo/MetaCodon.py
utils/ribo/Metaplot.py
utils/ribo/Occupancy.py
utils/ribo/Odd_Ratio.py
utils/ribo/Offset.py
utils/ribo/Offset_RSBM.py
utils/ribo/Pausing.py
utils/ribo/Periodicity.py
utils/ribo/Quality.py
utils/ribo/Quant.py
utils/ribo/RNA.py
utils/ribo/RPFs.py
utils/ribo/Retrieve.py
utils/ribo/Ribo.py
utils/ribo/Shuffle.py
utils/ribo/__init__.py
utils/serp/Properties.py
utils/serp/SeRP.py
utils/serp/__init__.py