AUTHORS.rst
CONTRIBUTING.rst
HISTORY.rst
LICENSE
MANIFEST.in
README.rst
setup.cfg
setup.py
RiboMetric/RiboMetric.py
RiboMetric/__init__.py
RiboMetric/arg_parser.py
RiboMetric/bam_processing.py
RiboMetric/cli.py
RiboMetric/config.yml
RiboMetric/file_parser.py
RiboMetric/file_splitting.py
RiboMetric/html_report.py
RiboMetric/metrics.py
RiboMetric/modules.py
RiboMetric/plots.py
RiboMetric/qc.py
RiboMetric/results_output.py
RiboMetric.egg-info/PKG-INFO
RiboMetric.egg-info/SOURCES.txt
RiboMetric.egg-info/dependency_links.txt
RiboMetric.egg-info/entry_points.txt
RiboMetric.egg-info/not-zip-safe
RiboMetric.egg-info/requires.txt
RiboMetric.egg-info/top_level.txt
RiboMetric/templates/RiboMetric_favicon.png
RiboMetric/templates/RiboMetric_logo.png
RiboMetric/templates/base.html
docs/Makefile
docs/authors.rst
docs/conf.py
docs/contributing.rst
docs/functions.rst
docs/history.rst
docs/index.rst
docs/installation.rst
docs/make.bat
docs/readme.rst
docs/results.rst
docs/usage.rst
tests/__init__.py
tests/test_RiboMetric.py
tests/test_metrics.py
tests/test_modules.py
tests/test_parser.py
tests/test_plots.py
tests/test_data/1000_entry.gff
tests/test_data/1000_entry_RiboMetric.tsv
tests/test_data/1000_entry_RibosomeProfiler.tsv
tests/test_data/parsed_test.csv
tests/test_data/test.bam
tests/test_data/test.bam.bai
tests/test_data/test.csv
tests/test_data/test.json
tests/test_data/test_RiboMetric.csv
tests/test_data/test_RiboMetric.html
tests/test_data/test_RiboMetric.json
tests/test_data/test_RiboMetric.pdf
tests/test_data/test_annotation.tsv