LICENSE
README.md
pyproject.toml
src/rhinotype/SNPeek.py
src/rhinotype/__init__.py
src/rhinotype/assign_types.py
src/rhinotype/count_SNPs.py
src/rhinotype/distance_helpers.py
src/rhinotype/genetic_distances.py
src/rhinotype/getprototypeseqs.py
src/rhinotype/main.py
src/rhinotype/overall_mean_distance.py
src/rhinotype/pairwise_distances.py
src/rhinotype/plot_AA.py
src/rhinotype/plot_distances.py
src/rhinotype/plot_frequency.py
src/rhinotype/plot_tree.py
src/rhinotype/readfasta.py
src/rhinotype.egg-info/PKG-INFO
src/rhinotype.egg-info/SOURCES.txt
src/rhinotype.egg-info/dependency_links.txt
src/rhinotype.egg-info/entry_points.txt
src/rhinotype.egg-info/requires.txt
src/rhinotype.egg-info/top_level.txt
src/rhinotype/data/Vp4_2_assigned_types.csv
src/rhinotype/data/input_aln.fasta
src/rhinotype/data/prototypes.csv
src/rhinotype/data/prototypes.fasta
src/rhinotype/data/test.fasta
src/rhinotype/data/test.translated.fasta
src/rhinotype/data/vp1_align.fasta
src/rhinotype/data/vp1_assigned_types.csv
src/rhinotype/data/vp1_prototypes.fasta
src/rhinotype/data/vp1_test.csv
src/rhinotype/data/vp1_test.fasta
src/rhinotype/data/vp1_test_data.fasta
src/rhinotype/data/vp1_test_translated.fasta