Metadata-Version: 2.1
Name: rfcommands
Version: 0.0.0
Summary: Set of command line tools used by RiboFlow pipeline.
Home-page: UNKNOWN
Author: Hakan Ozadam
License: MIT
Platform: UNKNOWN
Classifier: Development Status :: 3 - Alpha
Classifier: Operating System :: OS Independent
Classifier: Programming Language :: Python
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.6
Classifier: Programming Language :: Python :: 3.7
Description-Content-Type: text/markdown
Requires-Dist: numpy (>=1.16.1)
Requires-Dist: pandas (>=0.24.1)
Requires-Dist: click (>=7.0)
Requires-Dist: matplotlib (>=3.0.2)
Requires-Dist: multiprocess (>=0.70.7)
Requires-Dist: pysam (>=0.15.0)
Requires-Dist: pyyaml (>=5.1)

# RF Commands

RF Commands is a set of tools used by 
[RiboFlow](https://github.com/ribosomeprofiling/riboflow) pipeline to
compile alignment statistics, deduplicate, etc.

## Installation

### Pip

`pip install rfcommands`

### Github

You can install the latest version from github:
`pip install git+https://github.com/ribosomeprofiling/rfcommands.git`

## Documentation

Available in [Readthedocs](https://rfcommands.readthedocs.io/en/latest/)

## Usage

`rfc <command> [arguments]`

For help:

`rfc --help`


