Metadata-Version: 2.1
Name: rf-phate
Version: 0.0.2
Summary: RF-PHATE
Home-page: UNKNOWN
Author: Jake Rhodes
Author-email: jakerhodes@aggiemail.usu.edu
License: GNU General Public License Version 2
Description: # RF-PHATE
        
        RF-PHATE provides code used in the paper, "Random Forest-based Diffusion Information Geometry for Supervised Visualization and Data Exploration"
        The code may be used to generate random forest proximities which may, in turn, be used in multiple dimensionality-reduction algorithms.
        
        ## Installation
        
        ```bash
        pip install rf_phate
        ```
        
        ## Usage
        
        ```python
        from rf_phate import RandomForest, Embeddings
        
        # Creates a random forest classifier object
        rf = RandomForest.rf_classifier(n_estimators = 500, n_jobs = -2).fit(X, y)
        
        # Generates random forest proximities based on the data matrix X
        proximities = rf.get_proximities(X, method = 'oob', matrix_type = 'sparse')
        
        # Generates the RF-PHATE embeddings
        rf_phate = get_rf_embeddings(proximities, label_type = 'classification', types = 'phate',
        				n_components = 2, random_state = 0, n_jobs = -2)
        
        importance_correlation = get_importance_correlation(X, y, rf_phate)
        ```
        
        ## License
        [GNU]
Keywords: random forest,proximities,dimensionality reduction
Platform: UNKNOWN
Classifier: Development Status :: 3 - Alpha
Classifier: Intended Audience :: Education
Classifier: Programming Language :: Python :: 3
Classifier: Operating System :: Microsoft :: Windows
Description-Content-Type: text/markdown
