LICENSE
MANIFEST.in
README.md
pyproject.toml
requirements.txt
setup.cfg
setup.py
example/REVEALER_Example.ipynb
example/__init__.py
example/sample_input/CCLE_complete_sigs.gct
example/sample_input/NameConvert.csv
example/sample_input/TissueType_CCLE.gct
example/sample_input/__init__.py
example/sample_input/allgeneLocus.txt
example/sample_output/CCLE_NRF2_groudtruth.txt
example/sample_output/__init__.py
src/REVEALER.egg-info/PKG-INFO
src/REVEALER.egg-info/SOURCES.txt
src/REVEALER.egg-info/dependency_links.txt
src/REVEALER.egg-info/entry_points.txt
src/REVEALER.egg-info/not-zip-safe
src/REVEALER.egg-info/requires.txt
src/REVEALER.egg-info/top_level.txt
src/revealer/CheckGrid.c
src/revealer/CheckGrid.pyx
src/revealer/DepMapToCCLE.py
src/revealer/MutMaker.c
src/revealer/MutMaker.pyx
src/revealer/MutMaker_multi.py
src/revealer/MutMaker_old.py
src/revealer/REVEALER.py
src/revealer/REVEALER_Cython.c
src/revealer/REVEALER_Cython.pyx
src/revealer/REVEALER_Cython_old.pyx
src/revealer/REVEALER_preprocess.py
src/revealer/REVEALER_runbenchmark.c
src/revealer/REVEALER_runbenchmark.pyx
src/revealer/REVEALER_test.py
src/revealer/__init__.py
src/revealer/revealer.py
src/revealer/setup_cython.py
src/revealer/ccal/__init__.py
src/revealer/ccal/assign_colors.py
src/revealer/ccal/cluster_2d_array_rows.py
src/revealer/ccal/count_coclustering_and_normalize.py
src/revealer/ccal/decorate.py
src/revealer/ccal/dict_.py
src/revealer/ccal/hierarchical_cluster_distance_and_compute_ccc.py
src/revealer/ccal/multiprocess.py
src/revealer/ccal/nmf.py
src/revealer/ccal/nmf_consensus_cluster.py
src/revealer/ccal/nmf_consensus_cluster_with_multiple_k.py
src/revealer/ccal/normalize_1d_array.py
src/revealer/ccal/normalize_2d_array.py
src/revealer/ccal/path.py
src/revealer/ccal/plot_heatmap.py
src/revealer/ccal/plot_nmf.py
src/revealer/ccal/plot_points.py
src/revealer/ccal/save_plot.py
src/revealer/ccal/style.py
src/revealer/data/DepMapToCCLE.py
src/revealer/data/REVEALER_Example.ipynb
src/revealer/data/__init__.py
src/revealer/data/sample_input/CCLE_complete_sigs.gct
src/revealer/data/sample_input/NameConvert.csv
src/revealer/data/sample_input/TissueType_CCLE.gct
src/revealer/data/sample_input/__init__.py
src/revealer/data/sample_input/allgeneLocus.txt
src/revealer/data/sample_output/CCLE_NRF2_groudtruth.txt
src/revealer/data/sample_output/__init__.py