LICENSE
README.md
pyproject.toml
src/rettxmutation/__init__.py
src/rettxmutation/rettxmutation.py
src/rettxmutation/semantic_kernel_agents.py
src/rettxmutation/semantic_kernel_oneshot.py
src/rettxmutation.egg-info/PKG-INFO
src/rettxmutation.egg-info/SOURCES.txt
src/rettxmutation.egg-info/dependency_links.txt
src/rettxmutation.egg-info/requires.txt
src/rettxmutation.egg-info/top_level.txt
src/rettxmutation/adapters/variant_validator_adapter.py
src/rettxmutation/adapters/variant_validator_mapper.py
src/rettxmutation/agents/__init__.py
src/rettxmutation/agents/orchestrator.py
src/rettxmutation/agents/keywords/__init__.py
src/rettxmutation/agents/keywords/keywords_agent.py
src/rettxmutation/agents/keywords/keywords_plugin.py
src/rettxmutation/agents/normalize_mutation/mutation_plugin.py
src/rettxmutation/agents/normalize_mutation/mutation_service.py
src/rettxmutation/agents/normalize_mutation/normalize_agent.py
src/rettxmutation/agents/normalize_mutation/variant_validator_adapter.py
src/rettxmutation/agents/normalize_mutation/variant_validator_mapper.py
src/rettxmutation/agents/summarize/__init__.py
src/rettxmutation/agents/summarize/summary_agent.py
src/rettxmutation/agents/text_cleaner/__init__.py
src/rettxmutation/agents/text_cleaner/cleaner_plugin.py
src/rettxmutation/agents/text_cleaner/lights.py
src/rettxmutation/agents/text_cleaner/text_cleaner_agent.py
src/rettxmutation/agents/validate_patient/validate_patient_agent.py
src/rettxmutation/analysis/__init__.py
src/rettxmutation/analysis/document_processing.py
src/rettxmutation/analysis/gene_variant_detector.py
src/rettxmutation/analysis/models.py
src/rettxmutation/analysis/ocr_extractor.py
src/rettxmutation/analysis/openai_rettx_agents.py
src/rettxmutation/analysis/text_analytics.py
src/rettxmutation/analysis/text_cleaner.py
src/rettxmutation/analysis/data/__init__.py
src/rettxmutation/analysis/data/latest_transcript_version.json
src/rettxmutation/core/__init__.py
src/rettxmutation/core/config.py
src/rettxmutation/core/config_factory.py
src/rettxmutation/core/env_secret_loader.py
src/rettxmutation/core/secret_loader.py
src/rettxmutation/models/context.py
src/rettxmutation/models/document.py
src/rettxmutation/models/gene_assembly.py
src/rettxmutation/models/gene_models.py
src/rettxmutation/models/gene_registry.py
src/rettxmutation/models/mutation_model.py
src/rettxmutation/services/__init__.py
src/rettxmutation/services/agents_contracts.py
src/rettxmutation/services/embedding_service.py
src/rettxmutation/services/mutalyzer_mutation_service.py
src/rettxmutation/services/mutation_service.py
src/rettxmutation/services/mutation_service_factory.py
src/rettxmutation/services/mutation_service_interface.py
src/rettxmutation/services/ocr_extractor.py
src/rettxmutation/translators/mutation_translator.py
src/rettxmutation/utils/__init__.py
src/rettxmutation/utils/hgvs_descriptor.py
src/rettxmutation/utils/text_util.py
tests/test_gene_model.py
tests/test_image_processing.py
tests/test_models_document.py
tests/test_ocr_extractor.py
tests/test_openai_rettx_agents.py
tests/test_text_analytics.py
tests/test_text_cleaner.py
tests/test_variant_detector.py