.gitattributes
.gitignore
.readthedocs.yaml
LICENSE
MANIFEST.in
README.rst
pyproject.toml
setup.cfg
tox.ini
.github/workflows/ci.yaml
.github/workflows/e2e.yaml
docs/CHANGELOG.rst
docs/conf.py
docs/contributing.rst
docs/geneset.rst
docs/index.rst
docs/knowledge-base.rst
docs/metadata.rst
docs/ref.rst
docs/resdk-tables.rst
docs/start.rst
docs/topical.rst
docs/tutorial-basics.rst
docs/tutorial-create.rst
docs/tutorial-get.rst
docs/tutorials.rst
docs/files/index.py
docs/files/start.py
docs/files/tutorial-create.py
docs/files/tutorial-get.py
docs/images/data-hierarchy-diagram.png
docs/images/define_sample_collection_relations-01.png
docs/images/define_sample_collection_relations-02.png
docs/images/define_sample_collection_relations-03.png
docs/images/resolwe_resdk.jpg
src/resdk/__init__.py
src/resdk/constants.py
src/resdk/exceptions.py
src/resdk/query.py
src/resdk/resdk_logger.py
src/resdk/resolwe.py
src/resdk/uploader.py
src/resdk.egg-info/PKG-INFO
src/resdk.egg-info/SOURCES.txt
src/resdk.egg-info/dependency_links.txt
src/resdk.egg-info/requires.txt
src/resdk.egg-info/top_level.txt
src/resdk/aws/__init__.py
src/resdk/aws/session.py
src/resdk/resources/__init__.py
src/resdk/resources/annotations.py
src/resdk/resources/background_task.py
src/resdk/resources/base.py
src/resdk/resources/collection.py
src/resdk/resources/data.py
src/resdk/resources/descriptor.py
src/resdk/resources/geneset.py
src/resdk/resources/metadata.py
src/resdk/resources/permissions.py
src/resdk/resources/process.py
src/resdk/resources/relation.py
src/resdk/resources/sample.py
src/resdk/resources/user.py
src/resdk/resources/utils.py
src/resdk/resources/kb/__init__.py
src/resdk/resources/kb/feature.py
src/resdk/resources/kb/mapping.py
src/resdk/shortcuts/__init__.py
src/resdk/shortcuts/collection.py
src/resdk/shortcuts/sample.py
src/resdk/tables/__init__.py
src/resdk/tables/base.py
src/resdk/tables/methylation.py
src/resdk/tables/microarray.py
src/resdk/tables/ml_ready.py
src/resdk/tables/rna.py
src/resdk/tables/utils.py
src/resdk/tables/variant.py
src/resdk/utils/__init__.py
src/resdk/utils/decorators.py
src/resdk/utils/table_cache.py
tests/__init__.py
tests/files/annotation.gtf.gz
tests/files/example.fastq
tests/files/genome.fasta.gz
tests/files/globin.fasta
tests/files/reads.fastq.gz
tests/files/rrna.fasta
tests/functional/__init__.py
tests/functional/base.py
tests/functional/docs/__init__.py
tests/functional/docs/e2e_docs.py
tests/functional/duplication/__init__.py
tests/functional/duplication/e2e_duplication.py
tests/functional/filters/__init__.py
tests/functional/filters/e2e_filtering.py
tests/functional/genesets/__init__.py
tests/functional/genesets/e2e_genesets.py
tests/functional/metadata/__init__.py
tests/functional/metadata/e2e_metadata.py
tests/functional/permissions/__init__.py
tests/functional/permissions/e2e_permissions.py
tests/functional/resolwe/__init__.py
tests/functional/resolwe/e2e_resolwe.py
tests/functional/tables/__init__.py
tests/functional/tables/e2e_tables.py
tests/unit/__init__.py
tests/unit/test_base.py
tests/unit/test_collection.py
tests/unit/test_collections_shortcuts.py
tests/unit/test_data.py
tests/unit/test_decorators.py
tests/unit/test_exceptions.py
tests/unit/test_geneset.py
tests/unit/test_metadata.py
tests/unit/test_process.py
tests/unit/test_query.py
tests/unit/test_relations.py
tests/unit/test_resolwe.py
tests/unit/test_sample.py
tests/unit/test_tables.py
tests/unit/test_tables_cache.py
tests/unit/test_tables_ml.py
tests/unit/test_tables_variants.py
tests/unit/test_users.py
tests/unit/test_utils.py