Metadata-Version: 2.1
Name: remics
Version: 0.1.0
Summary: A Redescription-based framework for multi-omics analysis
Home-page: https://github.com/IBM/remics/src/remics
Author: Aritra Bose
Author-email: a.bose@ibm.com
Classifier: Programming Language :: Python :: 3
Classifier: License :: OSI Approved :: Apache Software License
Classifier: Operating System :: OS Independent
Requires-Python: >=3.9
Description-Content-Type: text/markdown
License-File: LICENSE

# Remics
A framework for Redescription-based multi-omics analysis 

[![Remics Diagram][remics]](#)

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## 📂 Project File Structure

The project structure is as follows:

``` 
Remics/
│
├── 📂 src/  # main source code
    ├── 📂 tcga/
    │   ├── 📄 compute_cuna_tcga.py # Reads the multi-omics files, performs feature selection, and compute cumulants
    │   ├── 📄 compute_cures_tcga.py # Reads the cumulants, associated vectors, integrated multi-omics files and computes CuRES, while also performing the classification task  
    │   ├── 📄 cuna_networks_tcga.py # Reads the cumulants file and compute the networks, its communities, and ranking of nodes according to importance in the network
│   ├── 📂 remics/
│       ├── 📄  cumulants.py # computes cumulants 
│       ├── 📄  cures.py # computes CuRES
│       ├── 📄  cuna.py # computes CuNA
│       ├── 📄  cumulants.jl # Julia subroutine performing cumulants
```

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[remics]: images/remics_final.jpg
