[ccpem_pipeliner.jobs]
combine_star_files_job = relion._parser.combine_star_job:ProcessStarFiles

[console_scripts]
combine_star_files = relion._parser.combine_star_files:main
external_job_cryolo = relion.cryolo_relion_it.cryolo_external_job:main
external_job_cryolo_fine_tune = relion.cryolo_relion_it.cryolo_fine_tune_job:main
external_job_fsc_fitting = relion.cryolo_relion_it.fsc_fitting_external_job:main
external_job_mask_soft_edge = relion.cryolo_relion_it.mask_soft_edge_external_job:main
external_job_reconstruct_halves = relion.cryolo_relion_it.reconstruct_halves_external_job:main
external_job_select_and_split = relion.cryolo_relion_it.select_and_split_external_job:main
relipy.job = relion.cli.current_job:run
relipy.link = relion.cli.project_linker:run
relipy.print_options = relion.cli.print_default_options:run
relipy.run_pipeline = relion.cli.run_pipeline:run
relipy.run_refine_pipeline = relion.cli.refine_pipeline:run
relipy.show = relion.cli.pipeline_viewer:run

[libtbx.precommit]
relion = relion

[workflows.services]
CTFFind = relion.zocalo.ctffind:CTFFind
ClusterSubmission = relion.zocalo.cluster_submission:ClusterSubmission
CrYOLO = relion.zocalo.cryolo:CrYOLO
Denoise = relion.zocalo.denoise:Denoise
Extract = relion.zocalo.extract:Extract
ISPyB = relion.zocalo.ispyb_service:EMISPyB
IceBreaker = relion.zocalo.icebreaker:IceBreaker
Images = relion.zocalo.images:Images
MotionCor = relion.zocalo.motioncorr:MotionCorr
MotionCorWilson = relion.zocalo.motioncorr_wilson:MotionCorrWilson
NodeCreator = relion.zocalo.node_creator:NodeCreator
RelionStopService = relion.zocalo.service:RelionStopService
SelectClasses = relion.zocalo.select_classes:SelectClasses
SelectParticles = relion.zocalo.select_particles:SelectParticles
TomoAlign = relion.zocalo.tomo_align:TomoAlign
TomoAlignIris = relion.zocalo.tomo_align_iris:TomoAlignIris

[zocalo.services.cluster.schedulers]
grid_engine = relion.zocalo.cluster_submission:submit_to_grid_engine
htcondor = relion.zocalo.cluster_submission:submit_to_htcondor
slurm = relion.zocalo.cluster_submission:submit_to_slurm

[zocalo.services.dispatcher.filters]
ispyb = relion.zocalo.ispyb_recipe_tools:ispyb_filter

[zocalo.services.dispatcher.ready_for_processing]
ispyb = relion.zocalo.ispyb_recipe_tools:ready_for_processing

[zocalo.services.images.plugins]
mrc_central_slice = relion.zocalo.images_service_plugin:mrc_central_slice
mrc_to_apng = relion.zocalo.images_service_plugin:mrc_to_apng
mrc_to_jpeg = relion.zocalo.images_service_plugin:mrc_to_jpeg
picked_particles = relion.zocalo.images_service_plugin:picked_particles

[zocalo.wrappers]
Class2D = relion.zocalo.class2d_wrapper:Class2DWrapper
Class3D = relion.zocalo.class3d_wrapper:Class3DWrapper
relion = relion.zocalo.wrapper:RelionWrapper
