LICENSE
MANIFEST.in
README.md
pyproject.toml
requirements.txt
relecov_tools/__init__.py
relecov_tools/__main__.py
relecov_tools/base_module.py
relecov_tools/build_schema.py
relecov_tools/config_json.py
relecov_tools/dataprocess_wrapper.py
relecov_tools/download_manager.py
relecov_tools/gisaid_upload.py
relecov_tools/json_schema.py
relecov_tools/json_validation.py
relecov_tools/log_summary.py
relecov_tools/mail.py
relecov_tools/map_schema.py
relecov_tools/metadata_homogeneizer.py
relecov_tools/pipeline_manager.py
relecov_tools/read_bioinfo_metadata.py
relecov_tools/read_lab_metadata.py
relecov_tools/rest_api.py
relecov_tools/sftp_client.py
relecov_tools/upload_database.py
relecov_tools/upload_ena_protocol.py
relecov_tools/upload_results.py
relecov_tools/utils.py
relecov_tools.egg-info/PKG-INFO
relecov_tools.egg-info/SOURCES.txt
relecov_tools.egg-info/dependency_links.txt
relecov_tools.egg-info/entry_points.txt
relecov_tools.egg-info/requires.txt
relecov_tools.egg-info/top_level.txt
relecov_tools/assets/Relecov_metadata_template_v3.1.1.xlsx
relecov_tools/assets/compare_sampleids.sh
relecov_tools/assets/ena_templates/ENA.project.xsd
relecov_tools/assets/ena_templates/ENA_template_FILE.xml
relecov_tools/assets/ena_templates/ENA_template_LIBRARY_SELECTION.xml
relecov_tools/assets/ena_templates/ENA_template_LIBRARY_SOURCE.xml
relecov_tools/assets/ena_templates/ENA_template_LIBRARY_STRATEGY.xml
relecov_tools/assets/ena_templates/ENA_template_PLATFORM.xml
relecov_tools/assets/ena_templates/ENA_template_experiments.xml
relecov_tools/assets/ena_templates/ENA_template_runs.xml
relecov_tools/assets/ena_templates/ENA_template_samples_ERC000011.xml
relecov_tools/assets/ena_templates/ENA_template_samples_ERC000012.xml
relecov_tools/assets/ena_templates/ENA_template_samples_ERC000013.xml
relecov_tools/assets/ena_templates/ENA_template_samples_ERC000014.xml
relecov_tools/assets/ena_templates/ENA_template_samples_ERC000015.xml
relecov_tools/assets/ena_templates/ENA_template_samples_ERC000016.xml
relecov_tools/assets/ena_templates/ENA_template_samples_ERC000017.xml
relecov_tools/assets/ena_templates/ENA_template_samples_ERC000018.xml
relecov_tools/assets/ena_templates/ENA_template_samples_ERC000019.xml
relecov_tools/assets/ena_templates/ENA_template_samples_ERC000020.xml
relecov_tools/assets/ena_templates/ENA_template_samples_ERC000021.xml
relecov_tools/assets/ena_templates/ENA_template_samples_ERC000022.xml
relecov_tools/assets/ena_templates/ENA_template_samples_ERC000023.xml
relecov_tools/assets/ena_templates/ENA_template_samples_ERC000024.xml
relecov_tools/assets/ena_templates/ENA_template_samples_ERC000025.xml
relecov_tools/assets/ena_templates/ENA_template_samples_ERC000027.xml
relecov_tools/assets/ena_templates/ENA_template_samples_ERC000028.xml
relecov_tools/assets/ena_templates/ENA_template_samples_ERC000029.xml
relecov_tools/assets/ena_templates/ENA_template_samples_ERC000030.xml
relecov_tools/assets/ena_templates/ENA_template_samples_ERC000031.xml
relecov_tools/assets/ena_templates/ENA_template_samples_ERC000032.xml
relecov_tools/assets/ena_templates/ENA_template_samples_ERC000033.xml
relecov_tools/assets/ena_templates/ENA_template_samples_ERC000034.xml
relecov_tools/assets/ena_templates/ENA_template_samples_ERC000035.xml
relecov_tools/assets/ena_templates/ENA_template_samples_ERC000036.xml
relecov_tools/assets/ena_templates/ENA_template_samples_ERC000037.xml
relecov_tools/assets/ena_templates/ENA_template_samples_ERC000038.xml
relecov_tools/assets/ena_templates/ENA_template_samples_ERC000039.xml
relecov_tools/assets/ena_templates/ENA_template_samples_ERC000040.xml
relecov_tools/assets/ena_templates/ENA_template_samples_ERC000041.xml
relecov_tools/assets/ena_templates/ENA_template_samples_ERC000043.xml
relecov_tools/assets/ena_templates/ENA_template_samples_ERC000044.xml
relecov_tools/assets/ena_templates/ENA_template_samples_ERC000045.xml
relecov_tools/assets/ena_templates/ENA_template_samples_ERC000047.xml
relecov_tools/assets/ena_templates/ENA_template_samples_ERC000048.xml
relecov_tools/assets/ena_templates/ENA_template_samples_ERC000049.xml
relecov_tools/assets/ena_templates/ENA_template_samples_ERC000050.xml
relecov_tools/assets/ena_templates/ENA_template_samples_ERC000051.xml
relecov_tools/assets/ena_templates/ENA_template_samples_ERC000052.xml
relecov_tools/assets/ena_templates/ENA_template_samples_ERC000053.xml
relecov_tools/assets/ena_templates/ENA_template_studies.xml
relecov_tools/assets/ena_templates/ENA_template_submission.xml
relecov_tools/assets/ena_templates/SRA.common.xsd
relecov_tools/assets/ena_templates/SRA.experiment.xsd
relecov_tools/assets/ena_templates/SRA.run.xsd
relecov_tools/assets/ena_templates/SRA.sample.xsd
relecov_tools/assets/ena_templates/SRA.study.xsd
relecov_tools/assets/ena_templates/SRA.submission.xsd
relecov_tools/assets/images/readBioinfoMetadata_processDiagram.png
relecov_tools/assets/institutions_utils/README.md
relecov_tools/assets/institutions_utils/transform.py
relecov_tools/assets/mail_templates/template_results_relecov.j2
relecov_tools/assets/mail_templates/template_success_relecov.j2
relecov_tools/assets/mail_templates/template_with_errors_relecov.j2
relecov_tools/assets/pipeline_utils/create_summary_tables.py
relecov_tools/assets/pipeline_utils/irma.py
relecov_tools/assets/pipeline_utils/utils.py
relecov_tools/assets/pipeline_utils/viralrecon.py
relecov_tools/assets/schema_utils/custom_validators.py
relecov_tools/assets/schema_utils/jsonschema_draft.py
relecov_tools/assets/schema_utils/metadatalab_template.py
relecov_tools/conf/anatomical_material_collection_method.json
relecov_tools/conf/bioinfo_config.json
relecov_tools/conf/build_schema_config.json
relecov_tools/conf/configuration.json
relecov_tools/conf/geo_loc_cities.json
relecov_tools/conf/initial_config.yaml
relecov_tools/conf/laboratory_address.json
relecov_tools/conf/non_sri_adress.json
relecov_tools/institution_scripts/ISCIII.py
relecov_tools/institution_scripts/__init__.py
relecov_tools/schema/ena_schema.json
relecov_tools/schema/gisaid_schema.json
relecov_tools/schema/institution_to_schema.json
relecov_tools/schema/phage_schema.json
relecov_tools/schema/relecov_schema.json
relecov_tools/schema/sample_relecov.xml
relecov_tools/schema/institution_schemas/HUGTiP.json
relecov_tools/schema/institution_schemas/HUNSC-ITER.json
relecov_tools/schema/institution_schemas/ISCIII.json
relecov_tools/schema/institution_schemas/template.json
tests/test_sftp_modules.py
tests/test_wrapper_handle.py