LICENSE
MANIFEST.in
README.md
pyproject.toml
requirements.txt
relecov_tools/__init__.py
relecov_tools/__main__.py
relecov_tools/base_module.py
relecov_tools/build_schema.py
relecov_tools/config_json.py
relecov_tools/dataprocess_wrapper.py
relecov_tools/download_manager.py
relecov_tools/gisaid_upload.py
relecov_tools/json_schema.py
relecov_tools/json_validation.py
relecov_tools/log_summary.py
relecov_tools/mail.py
relecov_tools/map_schema.py
relecov_tools/metadata_homogeneizer.py
relecov_tools/pipeline_manager.py
relecov_tools/read_bioinfo_metadata.py
relecov_tools/read_lab_metadata.py
relecov_tools/rest_api.py
relecov_tools/sftp_client.py
relecov_tools/upload_database.py
relecov_tools/upload_ena_protocol.py
relecov_tools/upload_results.py
relecov_tools/utils.py
relecov_tools.egg-info/PKG-INFO
relecov_tools.egg-info/SOURCES.txt
relecov_tools.egg-info/dependency_links.txt
relecov_tools.egg-info/entry_points.txt
relecov_tools.egg-info/requires.txt
relecov_tools.egg-info/top_level.txt
relecov_tools/assets/Relecov_metadata_template_v3.0.0.xlsx
relecov_tools/assets/compare_sampleids.sh
relecov_tools/assets/images/readBioinfoMetadata_processDiagram.png
relecov_tools/assets/pipeline_utils/create_summary_tables.py
relecov_tools/assets/pipeline_utils/viralrecon.py
relecov_tools/assets/schema_utils/custom_validators.py
relecov_tools/assets/schema_utils/jsonschema_draft.py
relecov_tools/assets/schema_utils/metadatalab_template.py
relecov_tools/conf/anatomical_material_collection_method.json
relecov_tools/conf/bioinfo_config.json
relecov_tools/conf/build_schema_config.json
relecov_tools/conf/configuration.json
relecov_tools/conf/geo_loc_cities.json
relecov_tools/conf/initial_config.yaml
relecov_tools/conf/laboratory_address.json
relecov_tools/institution_scripts/ISCIII.py
relecov_tools/institution_scripts/__init__.py
relecov_tools/schema/ena_schema.json
relecov_tools/schema/gisaid_schema.json
relecov_tools/schema/institution_to_schema.json
relecov_tools/schema/phage_schema.json
relecov_tools/schema/relecov_schema.json
relecov_tools/schema/sample_relecov.xml
relecov_tools/schema/institution_schemas/HUGTiP.json
relecov_tools/schema/institution_schemas/HUNSC-ITER.json
relecov_tools/schema/institution_schemas/ISCIII.json
relecov_tools/schema/institution_schemas/template.json
tests/test_sftp_modules.py
tests/test_wrapper_handle.py