LICENSE
README.md
pyproject.toml
src/refineGEMs.egg-info/PKG-INFO
src/refineGEMs.egg-info/SOURCES.txt
src/refineGEMs.egg-info/dependency_links.txt
src/refineGEMs.egg-info/entry_points.txt
src/refineGEMs.egg-info/requires.txt
src/refineGEMs.egg-info/top_level.txt
src/refinegems/__init__.py
src/refinegems/cmd_access.py
src/refinegems/analysis/__init__.py
src/refinegems/analysis/comparison.py
src/refinegems/analysis/core_pan.py
src/refinegems/analysis/growth.py
src/refinegems/analysis/investigate.py
src/refinegems/classes/__init__.py
src/refinegems/classes/egcs.py
src/refinegems/classes/gapfill.py
src/refinegems/classes/medium.py
src/refinegems/classes/reports.py
src/refinegems/curation/__init__.py
src/refinegems/curation/biomass.py
src/refinegems/curation/charges.py
src/refinegems/curation/curate.py
src/refinegems/curation/pathways.py
src/refinegems/curation/polish.py
src/refinegems/data/__init__.py
src/refinegems/data/config/__init__.py
src/refinegems/data/config/media_config.yml
src/refinegems/data/database/__init__.py
src/refinegems/data/database/current_bigg_db_version.txt
src/refinegems/data/database/data.db
src/refinegems/data/database/media_db.sql
src/refinegems/data/database/sbo_mapping_db.sql
src/refinegems/data/pathway/KEGG_pathway_metabolism.csv
src/refinegems/data/pathway/__init__.py
src/refinegems/developement/__init__.py
src/refinegems/developement/decorators.py
src/refinegems/example/__init__.py
src/refinegems/example/example_inputs/__init__.py
src/refinegems/example/example_inputs/custom_media_file.csv
src/refinegems/example/example_inputs/manual_curation.xlsx
src/refinegems/example/example_inputs/modelName_gapfill_analysis_date_example.xlsx
src/refinegems/utility/__init__.py
src/refinegems/utility/connections.py
src/refinegems/utility/cvterms.py
src/refinegems/utility/databases.py
src/refinegems/utility/db_access.py
src/refinegems/utility/entities.py
src/refinegems/utility/io.py
src/refinegems/utility/set_up.py
src/refinegems/utility/util.py