Metadata-Version: 2.1
Name: raugraf
Version: 0.0.5
Author-email: "K.D. Murray" <foss@kdmurray.id.au>
Classifier: License :: OSI Approved :: Mozilla Public License 2.0 (MPL 2.0)
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Classifier: Environment :: Console
Classifier: Development Status :: 3 - Alpha
Classifier: Intended Audience :: Science/Research
Classifier: Operating System :: POSIX
Classifier: Programming Language :: Python :: 3
Requires-Python: >=3.8
Description-Content-Type: text/markdown
License-File: LICENSE
Requires-Dist: tqdm
Requires-Dist: natsort

# Raugraf

Pangenomic diversity metrics

# Install

```
pipx install raugraf
```

# Tools

## Local Complexity/Node Radius

```
raugraf local-complexity \
	--graph mygraph.gfa \        # GFA from PGGB (or at least passed thru smooothxg and odgi)
	--jumps 20 \                 # Traverse up to 20 nodes away from the focal node
	--node-bed out.bedGraph      # Bedgraph of local complexity per node for each path in the pangenome
```
