LICENSE
MANIFEST.in
README.md
pyproject.toml
requirements.txt
setup.cfg
setup.py
./setup.py
./raresim/__init__.py
./raresim/__main__.py
./raresim/cli.py
./raresim/calculate/__init__.py
./raresim/calculate/expected_vars.py
./raresim/common/__init__.py
./raresim/common/bins.py
./raresim/common/exceptions.py
./raresim/common/legend.py
./raresim/common/sparse.py
./raresim/engine/__init__.py
./raresim/engine/config.py
./raresim/engine/pruners.py
./raresim/engine/runner.py
./raresim/engine/utils.py
./tests/__init__.py
./tests/conftest.py
./tests/get_expected_values.py
./tests/test_bins.py
./tests/test_config.py
./tests/test_exceptions.py
./tests/test_expected_vars.py
./tests/test_integration.py
./tests/test_legend.py
./tests/test_pruners.py
./tests/test_real_data_integration.py
./tests/test_sparse.py
./tests/test_utils.py
data/Expected_variants_functional.txt
data/Expected_variants_per_bin_80k.txt
data/Expected_variants_synonymous.txt
data/ProbExample.haps
data/ProbExample.probs.legend
data/ProtectiveExample.legend
data/Simulated_80k.legend
data/Simulated_80k_9.controls.haps.gz
data/SmallExample.stratified.legend
data/bigger_test.haps
data/bigger_test.haps.gz
data/chr19.block37.NFE.sim100.stratified.haps.gz
data/chr19.block37.NFE.sim100.stratified.legend
data/fonlyBins.txt
data/mac_bins.csv
data/test_fun_bins.txt
data/test_standard.haps
data/test_standard.legend
data/test_standard_bins.txt
data/test_stratified.haps
data/test_stratified.legend
data/test_syn_bins.txt
data/not_enough_singleton_samples/bins.txt
data/not_enough_singleton_samples/test.haps
data/not_enough_singleton_samples/test.legend
raresim/__init__.py
raresim/__main__.py
raresim/cli.py
raresim.egg-info/PKG-INFO
raresim.egg-info/SOURCES.txt
raresim.egg-info/dependency_links.txt
raresim.egg-info/entry_points.txt
raresim.egg-info/requires.txt
raresim.egg-info/top_level.txt
raresim/calculate/__init__.py
raresim/calculate/expected_vars.py
raresim/common/__init__.py
raresim/common/bins.py
raresim/common/exceptions.py
raresim/common/legend.py
raresim/common/sparse.py
raresim/engine/__init__.py
raresim/engine/config.py
raresim/engine/pruners.py
raresim/engine/runner.py
raresim/engine/utils.py
tests/__init__.py
tests/conftest.py
tests/get_expected_values.py
tests/test_bins.py
tests/test_config.py
tests/test_exceptions.py
tests/test_expected_vars.py
tests/test_integration.py
tests/test_legend.py
tests/test_pruners.py
tests/test_real_data_integration.py
tests/test_sparse.py
tests/test_utils.py