phenopackets
pyphetools
requests
typer
rich
linkml>=1.9.0
linkml-runtime>=1.9.0
pydantic<2.11
python-dotenv
rd-cdm>=2.0.3

[dev]
rarelink[docs,fhir,test]
build
twine
jupyter

[docs]
sphinx>=7
sphinx-rtd-theme>=1.3
sphinx-copybutton>=0.5

[fhir]
docker

[test]
pytest<9,>=7
pytest-mock
