numpy
jupyter
pandas
phenopackets
pyphetools
pytest
requests
config
sphinx-autobuild
sphinx-copybutton
sphinx-rtd-theme
typer
pytest-mock
tqdm
node
npm
linkml>=1.9.0
linkml-runtime>=1.9.0
pydantic<2.11
schema-automator
python-dotenv
docker
rd-cdm>=2.0.2

[dev]
build
twine
jupyter
sphinx>=7
sphinx-rtd-theme>=1.3
sphinx-copybutton>=0.5
pytest<9,>=7
pytest-mock
docker

[docs]
sphinx>=7
sphinx-rtd-theme>=1.3
sphinx-copybutton>=0.5

[test]
pytest<9,>=7
pytest-mock
