CHANGELOG.md
CODE_OF_CONDUCT.md
CONTRIBUTING.md
INSTALL.rst
LICENSE
MANIFEST.in
README.rst
TODO.md
USAGE.rst
VERSION
pyproject.toml
setup.cfg
setup.py
versioneer.py
cloud/gmscalc-HCPYA
cloud/mount-and-run
cloud/rapidtide-HCPYA
cloud/rapidtide-cloud-test
cloud/simple-cp-test
rapidtide/Colortables.py
rapidtide/OrthoImageItem.py
rapidtide/RapidtideDataset.py
rapidtide/__init__.py
rapidtide/_version.py
rapidtide/calccoherence.py
rapidtide/calcnullsimfunc.py
rapidtide/calcsimfunc.py
rapidtide/correlate.py
rapidtide/dlfilter.py
rapidtide/externaltools.py
rapidtide/filter.py
rapidtide/fit.py
rapidtide/glmpass.py
rapidtide/happy_supportfuncs.py
rapidtide/helper_classes.py
rapidtide/io.py
rapidtide/maskutil.py
rapidtide/miscmath.py
rapidtide/multiproc.py
rapidtide/peakeval.py
rapidtide/refine.py
rapidtide/resample.py
rapidtide/simfuncfit.py
rapidtide/stats.py
rapidtide/tidepoolTemplate.py
rapidtide/tidepoolTemplate.ui
rapidtide/tidepoolTemplate_alt.py
rapidtide/tidepoolTemplate_alt.ui
rapidtide/util.py
rapidtide/wiener.py
rapidtide/wiener2.py
rapidtide.egg-info/PKG-INFO
rapidtide.egg-info/SOURCES.txt
rapidtide.egg-info/dependency_links.txt
rapidtide.egg-info/not-zip-safe
rapidtide.egg-info/requires.txt
rapidtide.egg-info/top_level.txt
rapidtide/data/examples/src/installtestdata
rapidtide/data/examples/src/test_io
rapidtide/data/examples/src/test_rapidtidecompare
rapidtide/data/examples/src/testalign
rapidtide/data/examples/src/testatlasaverage
rapidtide/data/examples/src/testdecomp
rapidtide/data/examples/src/testfingerprint
rapidtide/data/examples/src/testfmri
rapidtide/data/examples/src/testfmridocker
rapidtide/data/examples/src/testglmfilt
rapidtide/data/examples/src/testhappy
rapidtide/data/examples/src/testoscorr
rapidtide/data/examples/src/testpad
rapidtide/data/examples/src/testsimdata
rapidtide/data/models/model_revised/model.h5
rapidtide/data/models/model_revised/model_meta.json
rapidtide/data/models/model_serdar/model.h5
rapidtide/data/models/model_serdar/model_meta.json
rapidtide/data/models/model_serdar2/model.h5
rapidtide/data/models/model_serdar2/model_meta.json
rapidtide/data/reference/ASPECTS_2mm.nii.gz
rapidtide/data/reference/ASPECTS_2mm_mask.nii.gz
rapidtide/data/reference/ASPECTS_3mm.nii.gz
rapidtide/data/reference/ASPECTS_3mm_mask.nii.gz
rapidtide/data/reference/ASPECTS_nlin_asym_09c_2mm.nii.gz
rapidtide/data/reference/ASPECTS_nlin_asym_09c_2mm_mask.nii.gz
rapidtide/data/reference/ASPECTS_regions.txt
rapidtide/data/reference/ATTbasedFlowTerritories_split_2mm.nii.gz
rapidtide/data/reference/ATTbasedFlowTerritories_split_2mm_mask.nii.gz
rapidtide/data/reference/ATTbasedFlowTerritories_split_nlin_asym_09c_2mm.nii.gz
rapidtide/data/reference/ATTbasedFlowTerritories_split_nlin_asym_09c_2mm_mask.nii.gz
rapidtide/data/reference/ATTbasedFlowTerritories_split_regions.txt
rapidtide/data/reference/HCP1200_binmask_2mm.nii.gz
rapidtide/data/reference/HCP1200_lag_2mm.nii.gz
rapidtide/data/reference/HCP1200_mask_2mm.nii.gz
rapidtide/data/reference/HCP1200_negmask_2mm.nii.gz
rapidtide/data/reference/HCP1200_sigma_2mm.nii.gz
rapidtide/data/reference/HCP1200_strength_2mm.nii.gz
rapidtide/data/reference/JHU-ArterialTerritoriesNoVent-LVL1.xml
rapidtide/data/reference/JHU-ArterialTerritoriesNoVent-LVL1_regions.txt
rapidtide/data/reference/JHU-ArterialTerritoriesNoVent-LVL1_space-MNI152NLin6Asym_2mm.nii.gz
rapidtide/data/reference/JHU-ArterialTerritoriesNoVent-LVL2.xml
rapidtide/data/reference/JHU-ArterialTerritoriesNoVent-LVL2_regions.txt
rapidtide/data/reference/JHU-ArterialTerritoriesNoVent-LVL2_space-MNI152NLin6Asym_2mm.nii.gz
rapidtide/data/reference/MNI152_T1_3mm.nii.gz
rapidtide/data/reference/MNI152_T1_3mm_brain_mask.nii.gz
rapidtide/data/reference/slicetimes/HCP-YA_slicetimes.txt
rapidtide/scripts/__init__.py
rapidtide/scripts/adjustoffset
rapidtide/scripts/aligntcs
rapidtide/scripts/applydlfilter
rapidtide/scripts/atlasaverage
rapidtide/scripts/atlastool
rapidtide/scripts/calcicc
rapidtide/scripts/calctexticc
rapidtide/scripts/calcttest
rapidtide/scripts/ccorrica
rapidtide/scripts/diffrois
rapidtide/scripts/endtidalproc
rapidtide/scripts/fdica
rapidtide/scripts/filtnifti
rapidtide/scripts/filttc
rapidtide/scripts/fingerprint
rapidtide/scripts/glmfilt
rapidtide/scripts/gmscalc
rapidtide/scripts/happy
rapidtide/scripts/happy2std
rapidtide/scripts/happywarp
rapidtide/scripts/histnifti
rapidtide/scripts/histtc
rapidtide/scripts/pairproc
rapidtide/scripts/pairwisemergenifti
rapidtide/scripts/physiofreq
rapidtide/scripts/pixelcomp
rapidtide/scripts/plethquality
rapidtide/scripts/polyfitim
rapidtide/scripts/proj2flow
rapidtide/scripts/rapidtide
rapidtide/scripts/rapidtide2std
rapidtide/scripts/resamp1tc
rapidtide/scripts/resamplenifti
rapidtide/scripts/roisummarize
rapidtide/scripts/showarbcorr
rapidtide/scripts/showhist
rapidtide/scripts/showstxcorr
rapidtide/scripts/showtc
rapidtide/scripts/showxcorr_legacy
rapidtide/scripts/showxcorrx
rapidtide/scripts/showxy
rapidtide/scripts/simdata
rapidtide/scripts/spatialdecomp
rapidtide/scripts/spatialfit
rapidtide/scripts/spatialmi
rapidtide/scripts/spectrogram
rapidtide/scripts/synthASL
rapidtide/scripts/tcfrom2col
rapidtide/scripts/tcfrom3col
rapidtide/scripts/temporaldecomp
rapidtide/scripts/testhrv
rapidtide/scripts/threeD
rapidtide/scripts/tidepool
rapidtide/scripts/variabilityizer
rapidtide/tests/.coveragerc
rapidtide/tests/__init__.py
rapidtide/tests/matplotlibrc
rapidtide/tests/resethappytargets
rapidtide/tests/resetrapidtidetargets
rapidtide/tests/resettargets
rapidtide/tests/runlocaltest
rapidtide/tests/showdirectories
rapidtide/tests/showkernels
rapidtide/tests/test_aliasedcorrelate.py
rapidtide/tests/test_aligntcs.py
rapidtide/tests/test_calcicc.py
rapidtide/tests/test_congrid.py
rapidtide/tests/test_correlate.py
rapidtide/tests/test_corrpass.py
rapidtide/tests/test_delayestimation.py
rapidtide/tests/test_doresample.py
rapidtide/tests/test_fastresampler.py
rapidtide/tests/test_filter.py
rapidtide/tests/test_findmaxlag.py
rapidtide/tests/test_fullrunhappy_v1.py
rapidtide/tests/test_fullrunhappy_v2.py
rapidtide/tests/test_fullrunhappy_v3.py
rapidtide/tests/test_fullrunhappy_v4.py
rapidtide/tests/test_fullrunrapidtide_v1.py
rapidtide/tests/test_fullrunrapidtide_v2.py
rapidtide/tests/test_fullrunrapidtide_v3.py
rapidtide/tests/test_fullrunrapidtide_v4.py
rapidtide/tests/test_fullrunrapidtide_v5.py
rapidtide/tests/test_fullrunzcompare.py
rapidtide/tests/test_glmpass.py
rapidtide/tests/test_io.py
rapidtide/tests/test_mi.py
rapidtide/tests/test_miscmath.py
rapidtide/tests/test_nullcorr.py
rapidtide/tests/test_phaseanalysis.py
rapidtide/tests/test_rapidtideparser.py
rapidtide/tests/test_runmisc.py
rapidtide/tests/test_simulate.py
rapidtide/tests/test_stcorrelate.py
rapidtide/tests/test_timeshift.py
rapidtide/tests/test_valtoindex.py
rapidtide/tests/test_zRapidtideDataset.py
rapidtide/tests/usercustomize.py
rapidtide/tests/utils.py
rapidtide/tests/testdata/100206_REST1_LR_cardfromfmri_25.0Hz.txt
rapidtide/tests/testdata/100206_REST1_LR_cardfromfmri_dlfiltered_25.0Hz.txt
rapidtide/tests/testdata/100206_REST1_LR_info.txt
rapidtide/tests/testdata/100206_REST1_LR_normcardfromfmri_25.0Hz.txt
rapidtide/tests/testdata/100206_REST1_LR_normcardfromfmri_dlfiltered_25.0Hz.txt
rapidtide/tests/testdata/100206_REST1_LR_normpleth_25.0Hz.txt
rapidtide/tests/testdata/100206_REST1_LR_pleth_25.0Hz.txt
rapidtide/tests/testdata/100206_REST1_LR_pleth_dlfiltered_25.0Hz.txt
rapidtide/tests/testdata/fmri_globalmean.txt
rapidtide/tests/testdata/happy_phase1target_vesselmask.nii.gz
rapidtide/tests/testdata/happy_phase2output_vesselmask.nii.gz
rapidtide/tests/testdata/happy_target_vesselmask.nii.gz
rapidtide/tests/testdata/lforegressor.txt
rapidtide/tests/testdata/lt_rt.txt
rapidtide/tests/testdata/phasetest.txt
rapidtide/tests/testdata/rapidtide2x_phase1target_reference_fmrires.txt
rapidtide/tests/testdata/stcorrtest_Rvalue.txt
rapidtide/tests/testdata/stcorrtest_delay.txt
rapidtide/tests/testdata/stcorrtest_mask.txt
rapidtide/tests/testdata/stcorrtest_pearson.txt
rapidtide/tests/testdata/stcorrtest_pvalue.txt
rapidtide/tests/testdata/testfilt.txt
rapidtide/tests/tmp/.placeholder.txt
rapidtide/workflows/__init__.py
rapidtide/workflows/aligntcs.py
rapidtide/workflows/fdica.py
rapidtide/workflows/glmfilt.py
rapidtide/workflows/gmscalc.py
rapidtide/workflows/happy.py
rapidtide/workflows/happy_parser.py
rapidtide/workflows/histnifti.py
rapidtide/workflows/niftidecomp.py
rapidtide/workflows/niftistats.py
rapidtide/workflows/parser_funcs.py
rapidtide/workflows/polyfitim.py
rapidtide/workflows/rapidtide.py
rapidtide/workflows/rapidtide_parser.py
rapidtide/workflows/roisummarize.py
rapidtide/workflows/showtc.py
rapidtide/workflows/tidepool.py
rapidtide/workflows/utils.py