LICENSE.txt
README.md
pyproject.toml
setup.py
raichu/__init__.py
raichu/alkaloid.py
raichu/antismash.py
raichu/attach_to_domain.py
raichu/class_domain.py
raichu/general.py
raichu/module.py
raichu/representations.py
raichu/ripp.py
raichu/run_raichu.py
raichu/smiles_handling.py
raichu/substrate.py
raichu/tailoring_enzymes.py
raichu.egg-info/PKG-INFO
raichu.egg-info/SOURCES.txt
raichu.egg-info/dependency_links.txt
raichu.egg-info/requires.txt
raichu.egg-info/top_level.txt
raichu/central_chain_detection/__init__.py
raichu/central_chain_detection/find_central_chain.py
raichu/central_chain_detection/label_central_chain.py
raichu/cluster/__init__.py
raichu/cluster/alkaloid_cluster.py
raichu/cluster/base_cluster.py
raichu/cluster/modular_cluster.py
raichu/cluster/ripp_cluster.py
raichu/cluster/terpene_cluster.py
raichu/data/__init__.py
raichu/data/at_elongation_specificities.txt
raichu/data/at_specificities.txt
raichu/data/attributes.py
raichu/data/metadata.txt
raichu/data/molecular_moieties.py
raichu/data/smiles.txt
raichu/data/substrate_to_abbreviation.txt
raichu/data/trans_at.py
raichu/domain/__init__.py
raichu/domain/domain.py
raichu/domain/domain_types.py
raichu/drawing/__init__.py
raichu/drawing/bubbles.py
raichu/drawing/colours.py
raichu/drawing/drawer.py
raichu/drawing/pathway.py
raichu/drawing/ripp_drawing.py
raichu/reactions/__init__.py
raichu/reactions/chain_release.py
raichu/reactions/general.py
raichu/reactions/general_tailoring_reactions.py
raichu/reactions/nrps_elongation_reactions.py
raichu/reactions/nrps_tailoring_reactions.py
raichu/reactions/pks_elongation_reactions.py
raichu/reactions/pks_sidechain_chirality.py
raichu/reactions/pks_tailoring_reactions.py
raichu/reactions/ripp_reactions.py
raichu/test/__init__.py
raichu/test/generate_test_data.py
raichu/test/integration/__init__.py
raichu/test/integration/test_alkaloid.py
raichu/test/integration/test_central_chain.py
raichu/test/integration/test_cis_at_pks.py
raichu/test/integration/test_hybrid.py
raichu/test/integration/test_nrps.py
raichu/test/integration/test_ripp.py
raichu/test/integration/test_terpene.py
raichu/test/integration/test_trans_at_pks.py
raichu/test/test_data/__init__.py
raichu/test/unit/__init__.py
raichu/test/unit/reactions/__init__.py
raichu/test/unit/reactions/test_general_tailoring_reactions.py
raichu/test/unit/reactions/test_nrps_tailoring_reactions.py
raichu/test/unit/reactions/test_tailoring_enzymes.py
raichu/validation/__init__.py
raichu/validation/cluster_from_file.py
raichu/validation/count_substrates.py
raichu/validation/create_random_clusters.py
raichu/validation/mibig_validation.py
raichu/validation/rerun_cluster.py
raichu/validation/run_antismash_cluster.py
raichu/validation/speed_assessment.py
raichu/validation/drawing_validation/__init__.py
raichu/validation/drawing_validation/overlap_detection.py
raichu/validation/drawing_validation/validate_central_chain.py