CHANGES.txt
LICENSE.txt
MANIFEST.in
setup.py
bin/repex-amber
bin/repex-version
examples/amber/archer.json
examples/amber/local.json
examples/amber/run.sh
examples/amber/s_remd_ace_ala_nme.json
examples/amber/stampede.json
examples/amber/t_remd_ace_ala_nme.json
examples/amber/t_remd_ala10.json
examples/amber/tsu_remd_ace_ala_nme.json
examples/amber/tuu_remd_ace_ala_nme.json
examples/amber/us_remd_ace_ala_nme.json
examples/amber/s_remd_inputs/ace_ala_nme.inpcrd
examples/amber/s_remd_inputs/ace_ala_nme.mdin
examples/amber/s_remd_inputs/ace_ala_nme.parm7
examples/amber/s_remd_inputs/ala10.mdin
examples/amber/s_remd_inputs/ala10.prmtop
examples/amber/s_remd_inputs/ala10_chir.dat
examples/amber/s_remd_inputs/ala10_minimized.inpcrd
examples/amber/t_remd_inputs/ace_ala_nme.inpcrd
examples/amber/t_remd_inputs/ace_ala_nme.mdin
examples/amber/t_remd_inputs/ace_ala_nme.parm7
examples/amber/t_remd_inputs/ala10.mdin
examples/amber/t_remd_inputs/ala10.prmtop
examples/amber/t_remd_inputs/ala10_chir.dat
examples/amber/t_remd_inputs/ala10_minimized.inpcrd
examples/amber/tsu_remd_inpits/ace_ala_nme.inpcrd
examples/amber/tsu_remd_inpits/ace_ala_nme.mdin
examples/amber/tsu_remd_inpits/ace_ala_nme.parm7
examples/amber/tsu_remd_inpits/ace_ala_nme_old.inpcrd.0.0
examples/amber/tsu_remd_inpits/ace_ala_nme_old.parm7
examples/amber/tsu_remd_inpits/ace_ala_nme_us.RST
examples/amber/tsu_remd_inpits/ala10.mdin
examples/amber/tsu_remd_inpits/ala10.prmtop
examples/amber/tsu_remd_inpits/ala10_chir.dat
examples/amber/tsu_remd_inpits/ala10_minimized.inpcrd.0.0
examples/amber/tsu_remd_inpits/ala10_us.RST
examples/amber/tuu_remd_inputs/RNaseA.inpcrd
examples/amber/tuu_remd_inputs/RNaseA.mdin
examples/amber/tuu_remd_inputs/RNaseA.parm7
examples/amber/tuu_remd_inputs/RNaseA_us.RST
examples/amber/tuu_remd_inputs/ace_ala_nme.inpcrd
examples/amber/tuu_remd_inputs/ace_ala_nme.mdin
examples/amber/tuu_remd_inputs/ace_ala_nme.parm7
examples/amber/tuu_remd_inputs/ace_ala_nme_us.RST
examples/amber/tuu_remd_inputs/ala10.mdin
examples/amber/tuu_remd_inputs/ala10.prmtop
examples/amber/tuu_remd_inputs/ala10_chir.dat
examples/amber/tuu_remd_inputs/ala10_minimized.inpcrd
examples/amber/tuu_remd_inputs/ala10_us.RST
examples/amber/tuu_remd_inputs/ala10_us.mdin
examples/amber/tuu_remd_inputs/phos_trans.inpcrd
examples/amber/tuu_remd_inputs/phos_trans.mdin
examples/amber/tuu_remd_inputs/phos_trans.parm7
examples/amber/tuu_remd_inputs/phos_trans_us.RST
examples/amber/tuu_remd_inputs/rstgen.py
examples/amber/tuu_remd_inputs/RNaseA_start_coords/u1.u3.inpcrd.0.0
examples/amber/tuu_remd_inputs/ace_ala_nme_coors/ace-ala-nme.inpcrd.0.0
examples/amber/tuu_remd_inputs/ace_ala_nme_coors/ace-ala-nme.inpcrd.0.1
examples/amber/tuu_remd_inputs/ace_ala_nme_coors/ace-ala-nme.inpcrd.0.2
examples/amber/tuu_remd_inputs/ace_ala_nme_coors/ace-ala-nme.inpcrd.0.3
examples/amber/tuu_remd_inputs/ace_ala_nme_coors/ace-ala-nme.inpcrd.1.0
examples/amber/tuu_remd_inputs/ace_ala_nme_coors/ace-ala-nme.inpcrd.1.1
examples/amber/tuu_remd_inputs/ace_ala_nme_coors/ace-ala-nme.inpcrd.1.2
examples/amber/tuu_remd_inputs/ace_ala_nme_coors/ace-ala-nme.inpcrd.1.3
examples/amber/tuu_remd_inputs/ace_ala_nme_coors/ace-ala-nme.inpcrd.2.0
examples/amber/tuu_remd_inputs/ace_ala_nme_coors/ace-ala-nme.inpcrd.2.1
examples/amber/tuu_remd_inputs/ace_ala_nme_coors/ace-ala-nme.inpcrd.2.2
examples/amber/tuu_remd_inputs/ace_ala_nme_coors/ace-ala-nme.inpcrd.2.3
examples/amber/tuu_remd_inputs/ace_ala_nme_coors/ace-ala-nme.inpcrd.3.0
examples/amber/tuu_remd_inputs/ace_ala_nme_coors/ace-ala-nme.inpcrd.3.1
examples/amber/tuu_remd_inputs/ace_ala_nme_coors/ace-ala-nme.inpcrd.3.2
examples/amber/tuu_remd_inputs/ace_ala_nme_coors/ace-ala-nme.inpcrd.3.3
examples/amber/us_remd_inputs/ace_ala_nme.inpcrd
examples/amber/us_remd_inputs/ace_ala_nme.mdin
examples/amber/us_remd_inputs/ace_ala_nme.parm7
examples/amber/us_remd_inputs/ace_ala_nme_us.RST
examples/amber/us_remd_inputs/ala10.mdin
examples/amber/us_remd_inputs/ala10.prmtop
examples/amber/us_remd_inputs/ala10_chir.dat
examples/amber/us_remd_inputs/ala10_minimized.inpcrd
examples/amber/us_remd_inputs/ala10_us.RST
examples/amber/us_remd_inputs/ala10_us.mdin
examples/amber/us_remd_inputs/rstgen.py
examples/amber/us_remd_inputs/ace_ala_nme_coors/ace-ala-nme.inpcrd.0.0
examples/amber/us_remd_inputs/ace_ala_nme_coors/ace-ala-nme.inpcrd.0.1
examples/amber/us_remd_inputs/ace_ala_nme_coors/ace-ala-nme.inpcrd.0.10
examples/amber/us_remd_inputs/ace_ala_nme_coors/ace-ala-nme.inpcrd.0.11
examples/amber/us_remd_inputs/ace_ala_nme_coors/ace-ala-nme.inpcrd.0.12
examples/amber/us_remd_inputs/ace_ala_nme_coors/ace-ala-nme.inpcrd.0.13
examples/amber/us_remd_inputs/ace_ala_nme_coors/ace-ala-nme.inpcrd.0.14
examples/amber/us_remd_inputs/ace_ala_nme_coors/ace-ala-nme.inpcrd.0.15
examples/amber/us_remd_inputs/ace_ala_nme_coors/ace-ala-nme.inpcrd.0.2
examples/amber/us_remd_inputs/ace_ala_nme_coors/ace-ala-nme.inpcrd.0.3
examples/amber/us_remd_inputs/ace_ala_nme_coors/ace-ala-nme.inpcrd.0.4
examples/amber/us_remd_inputs/ace_ala_nme_coors/ace-ala-nme.inpcrd.0.5
examples/amber/us_remd_inputs/ace_ala_nme_coors/ace-ala-nme.inpcrd.0.6
examples/amber/us_remd_inputs/ace_ala_nme_coors/ace-ala-nme.inpcrd.0.7
examples/amber/us_remd_inputs/ace_ala_nme_coors/ace-ala-nme.inpcrd.0.8
examples/amber/us_remd_inputs/ace_ala_nme_coors/ace-ala-nme.inpcrd.0.9
radical.repex.egg-info/PKG-INFO
radical.repex.egg-info/SOURCES.txt
radical.repex.egg-info/dependency_links.txt
radical.repex.egg-info/requires.txt
radical.repex.egg-info/top_level.txt
src/radical/repex/__init__.py
src/radical/repex/_version.py
src/radical/repex/kernels/__init__.py
src/radical/repex/kernels/kernels.py
src/radical/repex/md_kernels/__init__.py
src/radical/repex/md_kernels/amber_kernels_3d_tsu/__init__.py
src/radical/repex/md_kernels/amber_kernels_3d_tsu/global_ex_calculator.py
src/radical/repex/md_kernels/amber_kernels_3d_tsu/input_file_builder.py
src/radical/repex/md_kernels/amber_kernels_3d_tsu/kernel_pattern_s_3d_tsu.py
src/radical/repex/md_kernels/amber_kernels_3d_tsu/matrix_calculator_temp_ex.py
src/radical/repex/md_kernels/amber_kernels_3d_tsu/matrix_calculator_us_ex.py
src/radical/repex/md_kernels/amber_kernels_3d_tsu/salt_conc_post_exec.py
src/radical/repex/md_kernels/amber_kernels_3d_tsu/salt_conc_pre_exec.py
src/radical/repex/md_kernels/amber_kernels_3d_tuu/__init__.py
src/radical/repex/md_kernels/amber_kernels_3d_tuu/global_ex_calculator.py
src/radical/repex/md_kernels/amber_kernels_3d_tuu/input_file_builder.py
src/radical/repex/md_kernels/amber_kernels_3d_tuu/kernel_pattern_s_3d_tuu.py
src/radical/repex/md_kernels/amber_kernels_3d_tuu/matrix_calculator_temp_ex.py
src/radical/repex/md_kernels/amber_kernels_3d_tuu/matrix_calculator_us_ex.py
src/radical/repex/md_kernels/amber_kernels_salt/__init__.py
src/radical/repex/md_kernels/amber_kernels_salt/global_ex_calculator.py
src/radical/repex/md_kernels/amber_kernels_salt/input_file_builder.py
src/radical/repex/md_kernels/amber_kernels_salt/kernel_pattern_s_salt.py
src/radical/repex/md_kernels/amber_kernels_salt/salt_conc_post_exec.py
src/radical/repex/md_kernels/amber_kernels_salt/salt_conc_pre_exec.py
src/radical/repex/md_kernels/amber_kernels_tex/__init__.py
src/radical/repex/md_kernels/amber_kernels_tex/global_ex_calculator.py
src/radical/repex/md_kernels/amber_kernels_tex/ind_ex_calculator.py
src/radical/repex/md_kernels/amber_kernels_tex/input_file_builder.py
src/radical/repex/md_kernels/amber_kernels_tex/kernel_pattern_s_tex.py
src/radical/repex/md_kernels/amber_kernels_us/__init__.py
src/radical/repex/md_kernels/amber_kernels_us/global_ex_calculator.py
src/radical/repex/md_kernels/amber_kernels_us/ind_ex_calculator.py
src/radical/repex/md_kernels/amber_kernels_us/input_file_builder.py
src/radical/repex/md_kernels/amber_kernels_us/kernel_pattern_s_us.py
src/radical/repex/md_kernels/namd_kernels_tex/__init__.py
src/radical/repex/md_kernels/namd_kernels_tex/namd_kernel_tex.py
src/radical/repex/md_kernels/namd_kernels_tex/namd_kernel_tex_scheme_2.py
src/radical/repex/md_kernels/namd_kernels_tex/namd_kernel_tex_scheme_2a.py
src/radical/repex/md_kernels/namd_kernels_tex/namd_kernel_tex_scheme_3.py
src/radical/repex/md_kernels/namd_kernels_tex/namd_kernel_tex_scheme_4.py
src/radical/repex/md_kernels/namd_kernels_tex/namd_matrix_calculator_scheme_2.py
src/radical/repex/md_kernels/namd_kernels_tex/namd_matrix_calculator_scheme_4.py
src/radical/repex/pilot_kernels/__init__.py
src/radical/repex/pilot_kernels/pilot_kernel.py
src/radical/repex/pilot_kernels/pilot_kernel_pattern_s.py
src/radical/repex/pilot_kernels/pilot_kernel_pattern_s_multi_d.py
src/radical/repex/repex_utils/__init__.py
src/radical/repex/repex_utils/parser.py
src/radical/repex/repex_utils/replica_cleanup.py
src/radical/repex/replicas/__init__.py
src/radical/repex/replicas/replica.py