LICENSE
MANIFEST.in
README.md
setup.py
minc-toolkit-extras/antsRegistration_affine_SyN.sh
minc-toolkit-extras/ants_generate_iterations.py
optimized_antsMultivariateTemplateConstruction/make-dumb-average.sh
optimized_antsMultivariateTemplateConstruction/modelbuild.sh
optimized_antsMultivariateTemplateConstruction/modelbuild_averager.py
rabies/__init__.py
rabies/__version__.py
rabies/boilerplate.py
rabies/parser.py
rabies/run_main.py
rabies/utils.py
rabies/visualization.py
rabies.egg-info/PKG-INFO
rabies.egg-info/SOURCES.txt
rabies.egg-info/dependency_links.txt
rabies.egg-info/requires.txt
rabies.egg-info/top_level.txt
rabies/analysis_pkg/__init__.py
rabies/analysis_pkg/analysis_functions.py
rabies/analysis_pkg/analysis_math.py
rabies/analysis_pkg/analysis_wf.py
rabies/analysis_pkg/main_wf.py
rabies/analysis_pkg/utils.py
rabies/analysis_pkg/diagnosis_pkg/__init__.py
rabies/analysis_pkg/diagnosis_pkg/analysis_QC.py
rabies/analysis_pkg/diagnosis_pkg/diagnosis_functions.py
rabies/analysis_pkg/diagnosis_pkg/diagnosis_wf.py
rabies/analysis_pkg/diagnosis_pkg/interfaces.py
rabies/confound_correction_pkg/__init__.py
rabies/confound_correction_pkg/confound_correction.py
rabies/confound_correction_pkg/main_wf.py
rabies/confound_correction_pkg/utils.py
rabies/confound_correction_pkg/mod_ICA_AROMA/ICA_AROMA.py
rabies/confound_correction_pkg/mod_ICA_AROMA/ICA_AROMA_functions.py
rabies/confound_correction_pkg/mod_ICA_AROMA/__init__.py
rabies/confound_correction_pkg/mod_ICA_AROMA/classification_plots.py
rabies/confound_correction_pkg/mod_ICA_AROMA/ica-aroma-via-docker.py
rabies/preprocess_pkg/__init__.py
rabies/preprocess_pkg/bold_main_wf.py
rabies/preprocess_pkg/bold_ref.py
rabies/preprocess_pkg/commonspace_reg.py
rabies/preprocess_pkg/confounds.py
rabies/preprocess_pkg/hmc.py
rabies/preprocess_pkg/inho_correction.py
rabies/preprocess_pkg/main_wf.py
rabies/preprocess_pkg/preprocess_visual_QC.py
rabies/preprocess_pkg/registration.py
rabies/preprocess_pkg/resampling.py
rabies/preprocess_pkg/stc.py
rabies/preprocess_pkg/utils.py
scripts/error_check_rabies.py
scripts/gen_DSURQE_masks.py
scripts/install_DSURQE.sh
scripts/rabies
scripts/preprocess_scripts/EPI-preprocessing.sh
scripts/preprocess_scripts/multistage_otsu_cor.py
scripts/preprocess_scripts/null_nonlin.sh
scripts/preprocess_scripts/plot_overlap.sh
scripts/preprocess_scripts/structural-preprocessing.sh