LICENSE
MANIFEST.in
README.md
setup.py
minc-toolkit-extras/antsRegistration_affine_SyN.sh
minc-toolkit-extras/ants_generate_iterations.py
rabies/__init__.py
rabies/__version__.py
rabies/main_wf.py
rabies/run_main.py
rabies.egg-info/PKG-INFO
rabies.egg-info/SOURCES.txt
rabies.egg-info/dependency_links.txt
rabies.egg-info/requires.txt
rabies.egg-info/top_level.txt
rabies/analysis_pkg/__init__.py
rabies/analysis_pkg/analysis_functions.py
rabies/analysis_pkg/analysis_wf.py
rabies/analysis_pkg/data_diagnosis.py
rabies/analysis_pkg/prior_modeling.py
rabies/conf_reg_pkg/__init__.py
rabies/conf_reg_pkg/confound_regression.py
rabies/conf_reg_pkg/utils.py
rabies/conf_reg_pkg/mod_ICA_AROMA/ICA_AROMA.py
rabies/conf_reg_pkg/mod_ICA_AROMA/ICA_AROMA_functions.py
rabies/conf_reg_pkg/mod_ICA_AROMA/__init__.py
rabies/conf_reg_pkg/mod_ICA_AROMA/classification_plots.py
rabies/conf_reg_pkg/mod_ICA_AROMA/ica-aroma-via-docker.py
rabies/preprocess_pkg/__init__.py
rabies/preprocess_pkg/bias_correction.py
rabies/preprocess_pkg/bold_main_wf.py
rabies/preprocess_pkg/commonspace.py
rabies/preprocess_pkg/confounds.py
rabies/preprocess_pkg/hmc.py
rabies/preprocess_pkg/preprocess_visual_QC.py
rabies/preprocess_pkg/registration.py
rabies/preprocess_pkg/resampling.py
rabies/preprocess_pkg/stc.py
rabies/preprocess_pkg/utils.py
scripts/error_check_rabies.py
scripts/gen_DSURQE_masks.py
scripts/install_DSURQE.sh
scripts/rabies
scripts/preprocess_scripts/ants_dbm.sh
scripts/preprocess_scripts/heavy_SyN_registration.sh
scripts/preprocess_scripts/light_SyN_registration.sh
scripts/preprocess_scripts/multiRAT_registration.sh
scripts/preprocess_scripts/null_nonlin.sh
scripts/preprocess_scripts/plot_overlap.sh
scripts/preprocess_scripts/rabies-mouse-preprocessing-v5.sh
scripts/preprocess_scripts/rabies_antsMultivariateTemplateConstruction2.sh
twolevel_ants_dbm/twolevel_dbm.py