LICENSE
MANIFEST.in
README.md
setup.py
examples/S6K/AAEL018120-RE.S6K.fasta
examples/S6K/r2g.cmd.sh
examples/benchmark_100genes/results/S3UADYJX015-Alignment.xml
examples/benchmark_100genes/results/formal_test_1-0.fasta
examples/benchmark_100genes/results/formal_test_1-0.fasta.NCBIWWW.xml
examples/benchmark_100genes/results/summary_BLAST_results.tsv
examples/benchmark_100genes/results/summary_BLAST_results.xlsx
examples/benchmark_100genes/results/summary_table.VectorBase.tsv
examples/benchmark_100genes/results/summary_table.tsv
examples/benchmark_100genes/scripts/eggNOG.cmd.sh
examples/benchmark_100genes/scripts/get_OrthoDB.py
examples/benchmark_100genes/scripts/get_VB.py
examples/benchmark_100genes/scripts/get_eggNOG.py
examples/benchmark_100genes/scripts/parse_results.py
examples/benchmark_100genes/scripts/random_100_genes_benchmark.py
src/r2g/__init__.py
src/r2g/errors.py
src/r2g/path.json
src/r2g/quick_test.json
src/r2g/taxid_to_species.json
src/r2g.egg-info/PKG-INFO
src/r2g.egg-info/SOURCES.txt
src/r2g.egg-info/dependency_links.txt
src/r2g.egg-info/requires.txt
src/r2g.egg-info/top_level.txt
src/r2g/local/__init__.py
src/r2g/local/assemblers.py
src/r2g/online/NCBIWWW_selenium.py
src/r2g/online/__init__.py
src/r2g/online/blast.py
src/r2g/online/fetch.py
src/r2g/utils/__init__.py
src/r2g/utils/dryrun.py
src/scripts/r2g
tests/test_assemblers.py
tests/test_blast.py
tests/test_fetch.py
tests/test_r2g.py
tests/test_utils.py
tests/data/Trinity
tests/data/formatted_seq.json
tests/data/no_result.xml
tests/data/other_result.xml
tests/data/poll_NCBI_failed.html
tests/data/poll_NCBI_searching.html
tests/data/sample1_1.fastq.gz
tests/data/sample1_2.fastq.gz
tests/data/sample2_1.fastq.gz
tests/data/sample2_2.fastq.gz
tests/data/standard_result.xml