# Package Reorganization Complete! 🎉

## What Changed

The observational notebook system has been reorganized into a standalone package called **Qualia Flow** in the `packages/` directory.

## New Structure

```
packages/
└── qualia_flow/              # Standalone MLflow toolkit package
    ├── __init__.py           # Package exports
    ├── cli.py                # Command-line interface (with demo command)
    ├── explorer.py           # MLflow artifact exploration
    ├── generator.py          # Notebook generation
    ├── pyproject.toml        # Independent package config
    ├── README.md             # Package documentation
    ├── scripts/              # Standalone scripts
    │   ├── create_observational_notebook.py
    │   └── create_demo_runs.py
    ├── examples/             # Usage examples
    │   └── programmatic_usage.py
    └── docs/                 # Complete documentation
        ├── quick_start_observational_notebooks.md
        ├── observational_notebooks.md
        ├── QUICK_REFERENCE.md
        ├── ARCHITECTURE_DIAGRAM.md
        ├── PROJECT_COMPLETE.md
        ├── IMPLEMENTATION_OBSERVATIONAL_NOTEBOOKS.md
        └── RELEASE_NOTES.md
```

## Installation

The package can now be installed independently:

```bash
# From the main project
pip install -e .

# Or as a standalone package
cd packages/qualia_flow
pip install -e .
```

## New Commands

The CLI now has subcommands:

```bash
# Generate observational notebook (interactive)
qualia-flow create

# Create demo runs
qualia-flow demo 5           # Create 5 demo runs
qualia-flow demo 3 ./mlruns  # With custom tracking URI

# Show help
qualia-flow help
```

## Import Changes

All imports have been updated to use the standalone package:

**Old:**
```python
from qualia_lab.scripts.create_observational_notebook import (
    ArtifactExplorer,
    NotebookGenerator
)
```

**New:**
```python
from qualia_flow import ArtifactExplorer, NotebookGenerator
```

## Files Updated

1. **packages/qualia_flow/__init__.py** - Updated imports to use relative paths
2. **packages/qualia_flow/cli.py** - Updated imports, added demo command
3. **packages/qualia_flow/scripts/*** - Updated imports
4. **packages/qualia_flow/examples/*** - Updated imports
5. **packages/qualia_flow/pyproject.toml** - New standalone package config
6. **packages/qualia_flow/README.md** - New package README
7. **packages/README.md** - New packages directory README
8. **Main pyproject.toml** - Updated to reference qualia-flow command
9. **Main README.md** - Updated structure and Qualia Flow section

## Benefits

✅ **Modularity** - Qualia Flow can be developed independently
✅ **Reusability** - Can be used in other projects
✅ **Distribution** - Can be published as a separate package
✅ **Clarity** - Clear separation of concerns
✅ **Documentation** - Self-contained with its own docs

## Testing

To test the new structure:

```bash
# Install the package
cd packages/qualia_flow
pip install -e .

# Create demo runs
qualia-flow demo 3

# Generate a notebook
qualia-flow create
# Select the demo experiment and runs
```

## Next Steps

The package is now ready to:
- Be published to PyPI
- Be used in other projects
- Be developed independently
- Receive its own version control

## Migration Notes

No breaking changes for existing usage. The main project still includes Qualia Flow through the packages structure. The old script entry points have been replaced with the new `qualia-flow` command.
