LICENSE
MANIFEST.in
README.md
setup.py
docs/_config.yml
qsmxt/__init__.py
qsmxt/aseg_labels.csv
qsmxt/qsm_pipelines.json
qsmxt.egg-info/PKG-INFO
qsmxt.egg-info/SOURCES.txt
qsmxt.egg-info/dependency_links.txt
qsmxt.egg-info/entry_points.txt
qsmxt.egg-info/requires.txt
qsmxt.egg-info/top_level.txt
qsmxt/cli/__init__.py
qsmxt/cli/dicom_convert.py
qsmxt/cli/dicom_sort.py
qsmxt/cli/main.py
qsmxt/cli/nifti_convert.py
qsmxt/interfaces/__init__.py
qsmxt/interfaces/nipype_interface_addtojson.py
qsmxt/interfaces/nipype_interface_analyse.py
qsmxt/interfaces/nipype_interface_axialsampling.py
qsmxt/interfaces/nipype_interface_bet2.py
qsmxt/interfaces/nipype_interface_clearswi.py
qsmxt/interfaces/nipype_interface_combinemagnitude.py
qsmxt/interfaces/nipype_interface_copyfile.py
qsmxt/interfaces/nipype_interface_erode.py
qsmxt/interfaces/nipype_interface_fastsurfer.py
qsmxt/interfaces/nipype_interface_hdbet.py
qsmxt/interfaces/nipype_interface_json.py
qsmxt/interfaces/nipype_interface_laplacian_unwrapping.py
qsmxt/interfaces/nipype_interface_makehomogeneous.py
qsmxt/interfaces/nipype_interface_masking.py
qsmxt/interfaces/nipype_interface_mgz2nii.py
qsmxt/interfaces/nipype_interface_nextqsm.py
qsmxt/interfaces/nipype_interface_nii2dcm.py
qsmxt/interfaces/nipype_interface_nonzeroaverage.py
qsmxt/interfaces/nipype_interface_phaseweights.py
qsmxt/interfaces/nipype_interface_processphase.py
qsmxt/interfaces/nipype_interface_qsm_referencing.py
qsmxt/interfaces/nipype_interface_qsmjl.py
qsmxt/interfaces/nipype_interface_resample_like.py
qsmxt/interfaces/nipype_interface_romeo.py
qsmxt/interfaces/nipype_interface_t2star_r2star.py
qsmxt/interfaces/nipype_interface_tgv_qsm.py
qsmxt/interfaces/nipype_interface_tgv_qsm_jl.py
qsmxt/interfaces/nipype_interface_twopass.py
qsmxt/interfaces/utils.py
qsmxt/scripts/__init__.py
qsmxt/scripts/antsBuildTemplate.py
qsmxt/scripts/hagberg_pb_masking.jl
qsmxt/scripts/logger.py
qsmxt/scripts/makehomogeneous.jl
qsmxt/scripts/mrt_clearswi.jl
qsmxt/scripts/mrt_laplacian_unwrapping.jl
qsmxt/scripts/mrt_phase_weights.jl
qsmxt/scripts/mrt_t2star_r2star.jl
qsmxt/scripts/nii_fix_ge.py
qsmxt/scripts/qsmjl_full.jl
qsmxt/scripts/qsmjl_laplacian_unwrapping.jl
qsmxt/scripts/qsmjl_medi.jl
qsmxt/scripts/qsmjl_pdf.jl
qsmxt/scripts/qsmjl_phase_to_frequency.jl
qsmxt/scripts/qsmjl_rts.jl
qsmxt/scripts/qsmjl_tv.jl
qsmxt/scripts/qsmjl_vsharp.jl
qsmxt/scripts/qsmxt_functions.py
qsmxt/scripts/qsmxt_version.py
qsmxt/scripts/resample_like.py
qsmxt/scripts/romeo_unwrapping.jl
qsmxt/scripts/romeo_voxelquality.jl
qsmxt/scripts/sys_cmd.py
qsmxt/scripts/tgv_qsm.jl
qsmxt/scripts/user_input.py
qsmxt/tests/__init__.py
qsmxt/tests/setup_qsmxt.sh
qsmxt/tests/testInstanceSetup.sh
qsmxt/tests/test_hashes_qsm.txt
qsmxt/tests/test_qsm.py
qsmxt/tests/test_segmentation.py
qsmxt/tests/test_template.py
qsmxt/tests/test_transparent_singularity.sh
qsmxt/tests/utils.py
qsmxt/workflows/__init__.py
qsmxt/workflows/masking.py
qsmxt/workflows/qsm.py
qsmxt/workflows/template.py