LICENSE
PYPI.md
README.md
pyproject.toml
src/pyXLMS/__init__.py
src/pyXLMS/constants.py
src/pyXLMS/data.py
src/pyXLMS/pipelines.py
src/pyXLMS.egg-info/PKG-INFO
src/pyXLMS.egg-info/SOURCES.txt
src/pyXLMS.egg-info/dependency_links.txt
src/pyXLMS.egg-info/requires.txt
src/pyXLMS.egg-info/top_level.txt
src/pyXLMS/exporter/__init__.py
src/pyXLMS/exporter/to_alphalink2.py
src/pyXLMS/exporter/to_impxfdr.py
src/pyXLMS/exporter/to_msannika.py
src/pyXLMS/exporter/to_proxl.py
src/pyXLMS/exporter/to_proxl_util.py
src/pyXLMS/exporter/to_pyxlinkviewer.py
src/pyXLMS/exporter/to_xifdr.py
src/pyXLMS/exporter/to_xinet.py
src/pyXLMS/exporter/to_xiview.py
src/pyXLMS/exporter/to_xlinkdb.py
src/pyXLMS/exporter/to_xlmstools.py
src/pyXLMS/exporter/to_xmas.py
src/pyXLMS/exporter/util.py
src/pyXLMS/parser/__init__.py
src/pyXLMS/parser/parser_xldbse_custom.py
src/pyXLMS/parser/parser_xldbse_maxquant.py
src/pyXLMS/parser/parser_xldbse_merox.py
src/pyXLMS/parser/parser_xldbse_msannika.py
src/pyXLMS/parser/parser_xldbse_mzid.py
src/pyXLMS/parser/parser_xldbse_plink.py
src/pyXLMS/parser/parser_xldbse_scout.py
src/pyXLMS/parser/parser_xldbse_xi.py
src/pyXLMS/parser/parser_xldbse_xlinkx.py
src/pyXLMS/parser/util.py
src/pyXLMS/plotting/__init__.py
src/pyXLMS/plotting/plot_crosslink_type_distribution.py
src/pyXLMS/plotting/plot_peptide_pair_distribution.py
src/pyXLMS/plotting/plot_protein_distribution.py
src/pyXLMS/plotting/plot_score_distribution.py
src/pyXLMS/plotting/plot_target_decoy_distribution.py
src/pyXLMS/plotting/plot_venn_diagram.py
src/pyXLMS/transform/__init__.py
src/pyXLMS/transform/aggregate.py
src/pyXLMS/transform/annotate_fdr.py
src/pyXLMS/transform/filter.py
src/pyXLMS/transform/from_dataframe.py
src/pyXLMS/transform/intersection.py
src/pyXLMS/transform/reannotate_positions.py
src/pyXLMS/transform/summary.py
src/pyXLMS/transform/targets_only.py
src/pyXLMS/transform/to_dataframe.py
src/pyXLMS/transform/to_proforma.py
src/pyXLMS/transform/util.py
src/pyXLMS/transform/validate.py
tests/test_constants.py
tests/test_data_crosslink.py
tests/test_data_crosslink_from_csm.py
tests/test_data_crosslink_min.py
tests/test_data_csm.py
tests/test_data_csm_min.py
tests/test_exporter_to_alphalink2.py
tests/test_exporter_to_impxfdr.py
tests/test_exporter_to_msannika.py
tests/test_exporter_to_proxl.py
tests/test_exporter_to_pyxlinkviewer.py
tests/test_exporter_to_xifdr.py
tests/test_exporter_to_xinet.py
tests/test_exporter_to_xiview.py
tests/test_exporter_to_xlinkdb.py
tests/test_exporter_to_xlmstools.py
tests/test_exporter_to_xmas.py
tests/test_exporter_util.py
tests/test_parser.py
tests/test_parser_no_mods.py
tests/test_parser_util.py
tests/test_parser_xldbse_custom.py
tests/test_parser_xldbse_custom_filestream.py
tests/test_parser_xldbse_custom_no_mods.py
tests/test_parser_xldbse_maxquant.py
tests/test_parser_xldbse_maxquant_filestream.py
tests/test_parser_xldbse_maxquant_no_mods.py
tests/test_parser_xldbse_merox.py
tests/test_parser_xldbse_merox_no_mods.py
tests/test_parser_xldbse_msannika.py
tests/test_parser_xldbse_msannika_filestream.py
tests/test_parser_xldbse_msannika_no_mods.py
tests/test_parser_xldbse_msannika_pd.py
tests/test_parser_xldbse_msannika_pd_no_mods.py
tests/test_parser_xldbse_mzid.py
tests/test_parser_xldbse_mzid_filestream.py
tests/test_parser_xldbse_plink.py
tests/test_parser_xldbse_plink_crosslinks.py
tests/test_parser_xldbse_plink_no_mods.py
tests/test_parser_xldbse_scout.py
tests/test_parser_xldbse_scout_filestream.py
tests/test_parser_xldbse_scout_no_mods.py
tests/test_parser_xldbse_xi.py
tests/test_parser_xldbse_xi_filestream.py
tests/test_parser_xldbse_xi_no_mods.py
tests/test_parser_xldbse_xlinkx.py
tests/test_parser_xldbse_xlinkx_filestream.py
tests/test_parser_xldbse_xlinkx_no_mods.py
tests/test_parser_xldbse_xlinkx_pd.py
tests/test_parser_xldbse_xlinkx_pd_no_mods.py
tests/test_pipelines.py
tests/test_pipelines_all.py
tests/test_plotting_plot_crosslink_type_distribution.py
tests/test_plotting_plot_peptide_pair_distribution.py
tests/test_plotting_plot_protein_distribution.py
tests/test_plotting_plot_score_distribution.py
tests/test_plotting_plot_target_decoy_distribution.py
tests/test_plotting_plot_venn_diagram.py
tests/test_plotting_venn.py
tests/test_readme.py
tests/test_transform.py
tests/test_transform_aggregate.py
tests/test_transform_annotate_fdr.py
tests/test_transform_filter.py
tests/test_transform_from_dataframe.py
tests/test_transform_intersection.py
tests/test_transform_reannotate_positions.py
tests/test_transform_summary.py
tests/test_transform_targets_only.py
tests/test_transform_to_dataframe.py
tests/test_transform_to_proforma.py
tests/test_transform_validate.py