Metadata-Version: 1.1
Name: pyUSIrest
Version: 0.2.0.post2
Summary: Python USI submission REST API contain all methods to interact with EMBL-EBI Unified Submissions Interface
Home-page: https://github.com/cnr-ibba/pyUSIrest
Author: Paolo Cozzi
Author-email: cozzi@ibba.cnr.it
License: GNU General Public License v3
Description: ==============================
        Python USI submission REST API
        ==============================
        
        
        .. image:: https://img.shields.io/pypi/v/pyUSIrest.svg
                :target: https://pypi.python.org/pypi/pyUSIrest
        
        .. image:: https://img.shields.io/travis/cnr-ibba/pyUSIrest.svg
                :target: https://travis-ci.org/cnr-ibba/pyUSIrest
        
        .. image:: https://readthedocs.org/projects/pyusirest/badge/?version=latest
                :target: https://pyusirest.readthedocs.io/en/latest/?badge=latest
                :alt: Documentation Status
        
        .. image:: https://coveralls.io/repos/github/cnr-ibba/pyUSIrest/badge.svg?branch=master
                :target: https://coveralls.io/github/cnr-ibba/pyUSIrest?branch=master
        
        
        
        Python USI submission REST API contain all methods to interact with EMBL-EBI
        Unified Submissions Interface
        
        * Free software: GNU General Public License v3
        * Documentation: https://pyusirest.readthedocs.io.
        
        
        Features
        --------
        
        * Deal with EBI AAP_  (Authentication, Authorisation and Profile) service,
          generating tokens and dealing with User and Groups
        * Interact with EBI USI (Unified Submission Interface) in order to submit data to
          biosample as described by this guide_. In details:
        
          * Getting `USI API root`_
          * Selecting a Team_
          * Creating a Submission_
          * Adding `items to Submission`_
          * Checking Biosample `Validation`_
          * Finalising_ a Submission
        
        .. _AAP: https://explore.api.aai.ebi.ac.uk/docs/
        .. _guide: https://submission-test.ebi.ac.uk/api/docs/guide_getting_started.html
        .. _`USI API root`: https://submission-test.ebi.ac.uk/api/docs/guide_getting_started.html#_start_from_the_root
        .. _Team: https://submission-test.ebi.ac.uk/api/docs/guide_getting_started.html#_pick_a_team
        .. _Submission: https://submission-test.ebi.ac.uk/api/docs/guide_getting_started.html#_creating_a_submission
        .. _`items to Submission`: https://submission-test.ebi.ac.uk/api/docs/guide_getting_started.html#_adding_documents_to_a_submission
        .. _Validation: https://submission-test.ebi.ac.uk/api/docs/guide_getting_started.html#_validation
        .. _Finalising: https://submission-test.ebi.ac.uk/api/docs/guide_getting_started.html#_finalising_your_submission
        
        Credits
        -------
        
        This package was created with Cookiecutter_ and the `audreyr/cookiecutter-pypackage`_ project template.
        
        .. _Cookiecutter: https://github.com/audreyr/cookiecutter
        .. _`audreyr/cookiecutter-pypackage`: https://github.com/audreyr/cookiecutter-pypackage
        
        
        =======
        History
        =======
        
        0.2.1-dev
        ---------
        
        TODO
        ^^^^
        
        * ``Domain.users`` should returns ``User`` objects
        * update submission status after reload a just finalized submission
        
        
        0.2.0 (2018-10-23)
        ------------------
        
        Features
        ^^^^^^^^
        
        * Fetch submission by name
        * changed library name to ``pyUSIrest``
        * published to pypi
        * Finalize submission with *PUT*
        
        0.1.0 (2018-10-17)
        ------------------
        
        Features
        ^^^^^^^^
        
        * submit into biosample with python methods
        
Keywords: pyUSIrest
Platform: UNKNOWN
Classifier: Development Status :: 4 - Beta
Classifier: Intended Audience :: Developers
Classifier: Intended Audience :: Science/Research
Classifier: License :: OSI Approved :: GNU General Public License v3 (GPLv3)
Classifier: Natural Language :: English
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.4
Classifier: Programming Language :: Python :: 3.5
Classifier: Programming Language :: Python :: 3.6
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Classifier: Topic :: Software Development :: Libraries
