AUTHORS.rst
HISTORY.rst
LICENSE
MANIFEST.in
README.rst
setup.cfg
setup.py
versioneer.py
docs/Makefile
docs/authors.rst
docs/conf.py
docs/contributing.rst
docs/history.rst
docs/index.rst
docs/installation.rst
docs/make.bat
docs/modules.rst
docs/pytest_ngsfixtures.rst
docs/pytest_ngsfixtures.wm.rst
docs/usage.rst
docs/workflow.rst
pytest_ngsfixtures/__init__.py
pytest_ngsfixtures/_version.py
pytest_ngsfixtures/config.py
pytest_ngsfixtures/os.py
pytest_ngsfixtures/plugin.py
pytest_ngsfixtures/shell.py
pytest_ngsfixtures/utils.py
pytest_ngsfixtures.egg-info/PKG-INFO
pytest_ngsfixtures.egg-info/SOURCES.txt
pytest_ngsfixtures.egg-info/dependency_links.txt
pytest_ngsfixtures.egg-info/entry_points.txt
pytest_ngsfixtures.egg-info/not-zip-safe
pytest_ngsfixtures.egg-info/requires.txt
pytest_ngsfixtures.egg-info/top_level.txt
pytest_ngsfixtures/data/Snakefile
pytest_ngsfixtures/data/ref/ERCC_spikes.gb
pytest_ngsfixtures/data/ref/Makefile
pytest_ngsfixtures/data/ref/known.scaffolds.vcf.gz
pytest_ngsfixtures/data/ref/known.scaffolds.vcf.gz.tbi
pytest_ngsfixtures/data/ref/pAcGFP1-N1.fasta
pytest_ngsfixtures/data/ref/scaffolds-targets.bed
pytest_ngsfixtures/data/ref/scaffolds-targets.interval_list
pytest_ngsfixtures/data/ref/scaffolds-transcripts-tiny.bed12
pytest_ngsfixtures/data/ref/scaffolds-transcripts-tiny.genePred
pytest_ngsfixtures/data/ref/scaffolds-transcripts-tiny.gtf
pytest_ngsfixtures/data/ref/scaffolds-transcripts-tiny.refFlat
pytest_ngsfixtures/data/ref/scaffolds-transcripts.bed12
pytest_ngsfixtures/data/ref/scaffolds-transcripts.genePred
pytest_ngsfixtures/data/ref/scaffolds-transcripts.gtf
pytest_ngsfixtures/data/ref/scaffolds-transcripts.refFlat
pytest_ngsfixtures/data/ref/scaffolds.bed
pytest_ngsfixtures/data/ref/scaffolds.chrom.sizes
pytest_ngsfixtures/data/ref/scaffolds.dict
pytest_ngsfixtures/data/ref/scaffolds.fa
pytest_ngsfixtures/data/ref/scaffolds.fa.fai
pytest_ngsfixtures/data/ref/scaffolds.interval_list
pytest_ngsfixtures/data/ref/scaffoldsN.bed
pytest_ngsfixtures/data/ref/scaffoldsN.chrom.sizes
pytest_ngsfixtures/data/ref/scaffoldsN.dict
pytest_ngsfixtures/data/ref/scaffoldsN.fa
pytest_ngsfixtures/data/ref/scaffoldsN.fa.fai
pytest_ngsfixtures/data/seq/CHS.HG00512_1.fastq.gz
pytest_ngsfixtures/data/seq/CHS.HG00512_2.fastq.gz
pytest_ngsfixtures/data/seq/CHS.HG00513_1.fastq.gz
pytest_ngsfixtures/data/seq/CHS.HG00513_2.fastq.gz
pytest_ngsfixtures/data/seq/CHS_1.fastq.gz
pytest_ngsfixtures/data/seq/CHS_2.fastq.gz
pytest_ngsfixtures/data/seq/PUR.HG00731.A_1.fastq.gz
pytest_ngsfixtures/data/seq/PUR.HG00731.A_2.fastq.gz
pytest_ngsfixtures/data/seq/PUR.HG00731.B_1.fastq.gz
pytest_ngsfixtures/data/seq/PUR.HG00731.B_2.fastq.gz
pytest_ngsfixtures/data/seq/PUR.HG00731_1.fastq.gz
pytest_ngsfixtures/data/seq/PUR.HG00731_2.fastq.gz
pytest_ngsfixtures/data/seq/PUR.HG00733.A_1.fastq.gz
pytest_ngsfixtures/data/seq/PUR.HG00733.A_2.fastq.gz
pytest_ngsfixtures/data/seq/PUR.HG00733.B_1.fastq.gz
pytest_ngsfixtures/data/seq/PUR.HG00733.B_2.fastq.gz
pytest_ngsfixtures/data/seq/PUR.HG00733_1.fastq.gz
pytest_ngsfixtures/data/seq/PUR.HG00733_2.fastq.gz
pytest_ngsfixtures/data/seq/PUR_1.fastq.gz
pytest_ngsfixtures/data/seq/PUR_2.fastq.gz
pytest_ngsfixtures/data/seq/YRI.NA19238_1.fastq.gz
pytest_ngsfixtures/data/seq/YRI.NA19238_2.fastq.gz
pytest_ngsfixtures/data/seq/YRI.NA19239_1.fastq.gz
pytest_ngsfixtures/data/seq/YRI.NA19239_2.fastq.gz
pytest_ngsfixtures/data/seq/YRI_1.fastq.gz
pytest_ngsfixtures/data/seq/YRI_2.fastq.gz
pytest_ngsfixtures/tests/conftest.py
pytest_ngsfixtures/tests/test_workflow_docker.py
pytest_ngsfixtures/tests/test_workflow_flat_copy.py
pytest_ngsfixtures/tests/test_workflow_parametrize.py
pytest_ngsfixtures/tests/test_workflow_simple.py
pytest_ngsfixtures/wm/__init__.py
pytest_ngsfixtures/wm/snakemake.py
pytest_ngsfixtures/wm/utils.py
tests/conftest.py
tests/docker-compose.yaml
tests/test_config.py
tests/test_os.py
tests/test_plugin.py
tests/test_shell.py
tests/wm/Snakefile
tests/wm/test_snakemake.py