%-----------------------------------------
% Note: Use pdflatex to process this file.
%-----------------------------------------

\documentclass{book}

\usepackage{graphicx}
\usepackage{moreverb}
\usepackage{amsmath}
\usepackage{alltt}
\usepackage{rotating}
\usepackage{subcaption}
\usepackage{toc}
\usepackage{xspace}
\usepackage{makeidx}
\usepackage{multirow}
\usepackage{booktabs}   % For table layouts
\usepackage{longtable}


\usepackage[T1]{fontenc}   % so _, <, and > print correctly in text.
\usepackage[strings]{underscore}    % to use "_" in text
\usepackage[pdftex,colorlinks=true]{hyperref}  % This must be the last package

\input{macros.tex}

\setlength{\textwidth}{6.25in}
\setlength{\oddsidemargin}{0.25in}
\setlength{\evensidemargin}{0.00in}
\setlength{\textheight}{8.5in}
\setlength{\topmargin}{0in}

\renewcommand{\textfraction}{0.1}
\renewcommand{\topfraction}{1.0}
\renewcommand{\bottomfraction}{1.0}

\makeindex

\begin{document}

\index{lattice!model|see{model lattice}}
\index{lattice!design|see{design lattice}}
\index{lattice!base|see{base lattice}}

\include{cover-page}

%----------------------------------------------------------------
{
\setlength{\parskip}{\dPar}
\setlength{\parindent}{0ex}
}

%----------------------------------------------------------------

\cleardoublepage
\phantomsection 
\pdfbookmark[0]{Contents}{Contents}
\pdfbookmark[1]{Table of Contents}{toc} 
\tableofcontents


\cleardoublepage
\phantomsection 
\pdfbookmark[1]{List of Figures}{LoF} 
\listoffigures


\cleardoublepage
\phantomsection 
\pdfbookmark[1]{List of Tables}{LoT} 
\listoftables

%----------------------------------------------------------------
\setlength{\parskip}{\dPar}
\setlength{\parindent}{0ex}

%----------------------------------------------------------------

\include{overview}
\include{installation}
\include{startup}
\include{main-window}
\include{plotting}
\include{data}
\include{variables}
\include{other-windows}
\include{misc}
\include{gui-development}

%----------------------------------------------------------------
\include{bibliography}

\printindex

\end{document}
