"""pysurfex module."""
__version__ = '0.0.2'

from .file import SurfexIO, SurfexSurfIO, AsciiSurfexFile, NetCDFSurfexFile, ForcingFileNetCDF, \
    SurfFileTypeExtension, FaSurfexFile, SurfexFileVariable, NCSurfexFile, TexteSurfexFile, \
    PGDFile, PREPFile, SURFFile, read_surfex_points, guess_file_format, parse_filepattern, \
    read_surfex_field, get_surfex_io_object
from .geo import Geo, SurfexGeo, Cartesian, ConfProj, IGN, LonLatReg, LonLatVal, \
    get_geo_object, set_domain, shape2ign
from .read import Converter, ConvertedInput, ConstantValue, ReadData, \
    remove_existing_file
from .run import BatchJob, InputDataToSurfexBinaries, JsonInputData, JsonInputDataFromFile, \
    OutputDataFromSurfexBinaries, JsonOutputData, JsonOutputDataFromFile, Masterodb, SURFEXBinary, \
    PerturbedOffline, clean_working_dir, create_working_dir
from .assim import horizontal_oi
from .obs import Observation, ObservationSet, ObservationFromTitanJsonFile, JsonObservationSet, \
    MetFrostObservations, NetatmoObservationSet, sm_obs_sentinel, snow_pseudo_obs_cryoclim, \
    get_datasources, set_geo_from_obs_set
from .forcing import SurfexForcing, SurfexOutputForcing, AsciiOutput, NetCDFOutput, \
    SurfexNetCDFForcing, modify_forcing, write_formatted_array, set_forcing_config, \
    set_input_object, run_time_loop
from .netcdf import NetCDFReadVariable, NetCDFFileVariable, Netcdf, \
    create_netcdf_first_guess_template, read_cryoclim_nc, read_sentinel_nc, \
    read_first_guess_netcdf_file, write_analysis_netcdf_file, oi2soda
from .grib import Grib, Grib1Variable, Grib2Variable
from .bufr import BufrObservationSet
from .variable import Variable
from .util import deep_update, data_merge, merge_toml_env, merge_toml_env_from_files
from .cache import Cache
from .interpolation import Interpolation, fill_field, grid2points, get_num_neighbours
from .titan import QCDataSet, QualityControl, Departure, TitanDataSet, DomainCheck, \
    Climatology, Sct, Blacklist, Buddy, Plausibility, FirstGuess, Fraction, NoMeta, ObsOperator, \
    Redundancy, dataset_from_file, dataset_from_json, define_quality_control, \
    merge_json_qc_data_sets
from .timeseries import TimeSeriesFromConverter, TimeSeriesFromJson, TimeSeries
from .obsmon import write_obsmon_sqlite_file
from .fa import Fa
from .cli import parse_args_bufr2json, parse_args_create_forcing, parse_args_first_guess_for_oi, \
    parse_args_gridpp, parse_args_hm2pysurfex, parse_args_lsm_file_assim, parse_args_masterodb, \
    parse_args_merge_qc_data, parse_args_modify_forcing, parse_args_oi2soda, \
    parse_args_plot_points, parse_args_qc2obsmon, parse_args_set_geo_from_obs_set, \
    parse_args_set_geo_from_stationlist, parse_args_shape2ign, parse_args_surfex_binary, \
    parse_args_titan, parse_cryoclim_pseudoobs, parse_merge_namelist_settings, \
    parse_merge_toml_settings, parse_plot_timeseries_args, parse_sentinel_obs, \
    parse_timeseries2json, run_plot_points, run_bufr2json, run_cryoclim_pseuodoobs, run_gridpp, \
    run_lsm_file_assim, run_masterodb, run_merge_namelist_settings, run_merge_toml_settings, \
    run_oi2soda, run_plot_timeseries_from_json, run_sentinel_obs, run_shape2ign, \
    run_surfex_binary, run_timeseries2json, run_titan, first_guess_for_oi, \
    set_geo_from_stationlist, hm2pysurfex, merge_qc_data, LoadFromFile
from .namelist import Namelist, BaseNamelist, PgdInputData, PrepInputData, SodaInputData, \
    OfflineInputData, InlineForecastInputData, Ecoclimap, EcoclimapSG, ExternalSurfexInputFile, \
    SystemFilePaths, SystemFilePathsFromFile
from .configuration import Configuration, ConfigurationFromHarmonie, \
    ConfigurationFromHarmonieAndConfigFile, ConfigurationFromJsonFile

__all__ = ["AsciiOutput",
           "AsciiSurfexFile",
           "BaseNamelist",
           "BatchJob",
           "Blacklist",
           "Buddy",
           "BufrObservationSet",
           "Cache",
           "Cartesian",
           "Climatology",
           "ConfProj",
           "Configuration",
           "ConfigurationFromHarmonie",
           "ConfigurationFromHarmonieAndConfigFile",
           "ConfigurationFromJsonFile",
           "ConstantValue",
           "Converter",
           "ConvertedInput",
           "Departure",
           "DomainCheck",
           "Ecoclimap",
           "EcoclimapSG",
           "ExternalSurfexInputFile",
           "Fa",
           "FaSurfexFile",
           "FirstGuess",
           "ForcingFileNetCDF",
           "Fraction",
           "Geo",
           "Grib",
           "Grib1Variable",
           "Grib2Variable",
           "IGN",
           "InlineForecastInputData",
           "InputDataToSurfexBinaries",
           "Interpolation",
           "JsonInputData",
           "JsonInputDataFromFile",
           "JsonObservationSet",
           "JsonOutputData",
           "JsonOutputDataFromFile",
           "LoadFromFile",
           "LonLatReg",
           "LonLatVal",
           "Masterodb",
           "MetFrostObservations",
           "Namelist",
           "NetatmoObservationSet",
           "Netcdf",
           "NetCDFSurfexFile",
           "NCSurfexFile",
           "NetCDFOutput",
           "NetCDFReadVariable",
           "NetCDFFileVariable",
           "NoMeta",
           "Observation",
           "ObservationSet",
           "ObservationFromTitanJsonFile",
           "ObsOperator",
           "OfflineInputData",
           "OutputDataFromSurfexBinaries",
           "QCDataSet",
           "QualityControl",
           "PerturbedOffline",
           "PGDFile",
           "PgdInputData",
           "PREPFile",
           "Plausibility",
           "PrepInputData",
           "ReadData",
           "Redundancy",
           "Sct",
           "SodaInputData",
           "SURFEXBinary",
           "SurfexFileVariable",
           "SurfexForcing",
           "SurfexGeo",
           "SurfexIO",
           "SurfexSurfIO",
           "SurfexOutputForcing",
           "SurfexNetCDFForcing",
           "SURFFile",
           "SurfFileTypeExtension",
           "SystemFilePaths",
           "SystemFilePathsFromFile",
           "TexteSurfexFile",
           "TimeSeriesFromConverter",
           "TimeSeriesFromJson",
           "TimeSeries",
           "TitanDataSet",
           "Variable",
           #
           "clean_working_dir",
           "create_netcdf_first_guess_template",
           "create_working_dir",
           "data_merge",
           "deep_update",
           "dataset_from_file",
           "dataset_from_json",
           "define_quality_control",
           "horizontal_oi",
           "get_surfex_io_object",
           "get_geo_object",
           "get_datasources",
           "get_num_neighbours",
           "guess_file_format",
           "fill_field",
           "first_guess_for_oi",
           "grid2points",
           "hm2pysurfex",
           "merge_json_qc_data_sets",
           "merge_toml_env",
           "merge_toml_env_from_files",
           "merge_qc_data",
           "modify_forcing",
           "oi2soda",
           "parse_args_bufr2json",
           "parse_args_create_forcing",
           "parse_args_first_guess_for_oi",
           "parse_args_gridpp",
           "parse_args_hm2pysurfex",
           "parse_args_lsm_file_assim",
           "parse_args_masterodb",
           "parse_args_merge_qc_data",
           "parse_args_modify_forcing",
           "parse_args_oi2soda",
           "parse_args_plot_points",
           "parse_args_qc2obsmon",
           "parse_args_set_geo_from_obs_set",
           "parse_args_set_geo_from_stationlist",
           "parse_args_shape2ign",
           "parse_args_surfex_binary",
           "parse_args_titan",
           "parse_cryoclim_pseudoobs",
           "parse_merge_namelist_settings",
           "parse_merge_toml_settings",
           "parse_plot_timeseries_args",
           "parse_sentinel_obs",
           "parse_timeseries2json",
           "parse_filepattern",
           "read_cryoclim_nc",
           "read_first_guess_netcdf_file",
           "read_sentinel_nc",
           "read_surfex_field",
           "read_surfex_points",
           "remove_existing_file",
           "run_plot_points",
           "run_bufr2json",
           "run_cryoclim_pseuodoobs",
           "run_gridpp",
           "run_lsm_file_assim",
           "run_masterodb",
           "run_merge_namelist_settings",
           "run_merge_toml_settings",
           "run_oi2soda",
           "run_plot_timeseries_from_json",
           "run_sentinel_obs",
           "run_shape2ign",
           "run_surfex_binary",
           "run_timeseries2json",
           "run_titan",
           "run_time_loop",
           "set_domain",
           "set_forcing_config",
           "set_geo_from_obs_set",
           "set_geo_from_stationlist",
           "set_input_object",
           "shape2ign",
           "sm_obs_sentinel",
           "snow_pseudo_obs_cryoclim",
           "write_analysis_netcdf_file",
           "write_formatted_array",
           "write_obsmon_sqlite_file",
           ]
