MANIFEST.in
README.md
pyproject.toml
pyspoa.cpp
setup.py
pyspoa.egg-info/PKG-INFO
pyspoa.egg-info/SOURCES.txt
pyspoa.egg-info/dependency_links.txt
pyspoa.egg-info/not-zip-safe
pyspoa.egg-info/top_level.txt
src/.git
src/.gitignore
src/CMakeLists.txt
src/Config.cmake.in
src/LICENSE
src/README.md
src/meson.build
src/meson_options.txt
src/.github/workflows/spoa.yml
src/include/meson.build
src/include/spoa/alignment_engine.hpp
src/include/spoa/graph.hpp
src/include/spoa/spoa.hpp
src/include/spoa/version.hpp
src/src/alignment_engine.cpp
src/src/architectures.hpp
src/src/graph.cpp
src/src/main.cpp
src/src/meson.build
src/src/simd_alignment_engine.hpp
src/src/simd_alignment_engine_dispatch.cpp
src/src/simd_alignment_engine_dispatcher.cpp
src/src/simd_alignment_engine_implementation.hpp
src/src/sisd_alignment_engine.cpp
src/src/sisd_alignment_engine.hpp
src/src/spoa_config.h.in
src/src/version.cpp
src/subprojects/bioparser.wrap
src/subprojects/biosoup.wrap
src/subprojects/cereal.wrap
src/subprojects/gtest.wrap
src/subprojects/simde.wrap
src/test/meson.build
src/test/spoa_test.cpp
src/test/spoa_test_config.h.in
src/test/data/sample.fastq.gz